Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq33599 105 1e-17 seq34050 86.0 1e-11 >seq33599 Length=161954 Score = 105 bits (116), Expect = 1e-17 Identities = 318/488 (65%), Gaps = 5/488 (1%) Strand=Plus/Minus Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 ||||||||||||| ||||| || | ||||||||| || || || ||| | | | || | Sbjct 157774 CATAGAGCATGCACGCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCG 157715 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 ||||| | | || ||||| | || | || ||| |||||||| || || ||| | Sbjct 157714 AGAAGGACAACCCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCC 157655 Query 48240 CAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGT 48299 ||||||||||||| ||||| || ||||| || | | ||| |||| || | Sbjct 157654 CAGAGAAGAAGATCCCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGA---TT 157598 Query 48300 TCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 | | | ||||| || ||||| | |||||||||| | || |||| || | Sbjct 157597 CCGAGCCATCAATCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTAT 157538 Query 48360 CTATGGCCCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCT 48419 | || || |||| | | | | ||| | | ||| | || || | ||| Sbjct 157537 CAATCGCGTGGAACAACCTATCCTTCTCTTCAGAATCCTTGATGTAAGTCTCCAACAGAA 157478 Query 48420 TTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGG 48479 ||||||||||||||| | |||||| || ||||||||||| || || || || | | Sbjct 157477 GACTGTACATCTCAGAGTGGATATTCTCGATGGCGATCTGGAATCCATAAAACGCACGCG 157418 Query 48480 CCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCA 48538 |||| | ||| || || | ||| | ||| || |||||||| || || || Sbjct 157417 CCTCCGCAATCTGGACCTCCTTCATGAA-CCGTCCGGCAAGATTCTCCAAAACGATGCCG 157359 Query 48539 TCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGA 48598 || || || ||||| |||||||| || || |||| || || ||||| | ||| || Sbjct 157358 TCGGAGGCGGCAAAAAAGGCAAGTACGTGCTTAATAAAGTGCTTCTCGTCGGAGGTTAGG 157299 Query 48599 GCATTCCA 48606 || | ||| Sbjct 157298 GCTTCCCA 157291 >seq34050 Length=239353 Score = 86.0 bits (94), Expect = 1e-11 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 48120 CATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGG 48179 ||||||||||||| ||||| || | ||||||||| || || || ||| | | | || | Sbjct 39594 CATAGAGCATGCACGCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCG 39535 Query 48180 AGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGC 48239 ||||| | | || ||||| | || | || ||| |||||||| || || ||| | Sbjct 39534 AGAAGGATAACCCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCC 39475 Query 48240 CAGAGAAGAAGATGCCCTCCAC 48261 ||||||||||||| ||||| || Sbjct 39474 CAGAGAAGAAGATCCCCTCAAC 39453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930631542016000