Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq34118 163 3e-35 seq33222 113 5e-20 seq34317 95.1 1e-14 seq30018 87.8 2e-12 >seq34118 Length=323312 Score = 163 bits (180), Expect = 3e-35 Identities = 224/313 (72%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 10227 TTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGA 10286 ||||||| ||| ||| | || ||||| || || |||||| |||||||||||||||| | Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 10287 GTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGA 10346 |||| || || || | || || || | | | ||||| | || || ||||||||||||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 10347 CGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAG 10406 | | | || || |||||||||||||||| ||| || |||| || | |||| | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 10407 CAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTT 10466 | || || || | || |||||||| || | | | |||| || || ||||| || | Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 10467 TCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTT 10526 || |||||| | |||||| ||||| || ||||| ||| |||||||||||| | Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 10527 TCTGGTCCCAGAT 10539 | |||||||| || Sbjct 6770 TTTGGTCCCAAAT 6758 >seq33222 Length=111615 Score = 113 bits (124), Expect = 5e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 10279 TGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCA 10338 |||||| ||||| || || || || || || || ||| | |||| | || || ||||| Sbjct 60581 TGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCA 60522 Query 10339 TAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCT 10398 ||||||||| | || || || ||||||||||||||||| ||| || |||| | | | Sbjct 60521 TAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTT 60462 Query 10399 CCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGC 10458 |||| | || || || | ||| ||||||| || | | | ||||||| || || Sbjct 60461 GCTATGCACTATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGC 60402 Query 10459 AAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTAC 10515 ||| || ||| |||||| | |||||| ||||| || ||||| |||||||| Sbjct 60401 AAATACATTCCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 8953 CATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTG 9012 ||||| || ||||||| ||||||||||||||||| ||| ||||| ||| | || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 9013 CATTTCTTCCTCGCTGCGTGGCCTGT-----GGTGGGAATCTGGTTTACCGCCCTCGGCG 9067 || |||||| | | ||| |||||||| ||| || |||||||| | ||| | || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 9068 TCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCC 9114 || | ||||| |||||||| || || ||||| |||||||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCC 200394 >seq30018 Length=17342 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 8734 ACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCACAACATCCTGATGCACCCCTTCCAC 8793 || ||||| | ||| |||| | |||||| |||||||||| || | |||||| || || Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 8794 ATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTC 8849 ||| | ||||| |||||||| |||| || ||||| || | || ||||||||||| Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGGTTC 7305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515980305600000