Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq33274 93.3 4e-14 seq33279 87.8 2e-12 seq33195 84.2 2e-11 >seq33274 Length=135285 Score = 93.3 bits (102), Expect = 4e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | || |||||| ||||| || |||||||| || ||||| |||||| Sbjct 48374 GACAAGGAGGGCATCCCACCAGATCAGCAGAGGCTGATCTTTGCTGGTAAACAGTTGGAA 48315 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| | ||| |||| ||||||||||| || ||||| ||||| |||||| Sbjct 48314 GATGGAAGGACTCTGGCTGATTATAACATCCAGAAAGAGTCTACCCTGCAC 48264 >seq33279 Length=59633 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || | || || || |||||||| || |||| || Sbjct 12001 ATGCAGATATTTGTGAAGACCCTGACTGGAAAGACCATTACTTTGGAGGTGGAAAGCTCT 11942 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| ||||| | || |||||| Sbjct 11941 GACACTATTGACAATGTGAAAGCCAAGATTCAA-GACAAGGAGGGCATCCCACCAGATCA 11883 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || || || ||||||||| | ||| |||| |||||||| Sbjct 11882 GCAGAGGCTGATCTTTGCTGGAAAGCAGTTGGAAGATGGAAGGACTCTGGCTGATTATAA 11823 Query 28733 CATTCAAAAAGAATCTACTCTGCAC 28757 ||| || ||||| || || |||||| Sbjct 11822 CATCCAGAAAGAGTCCACCCTGCAC 11798 >seq33195 Length=51125 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | || |||||| ||||| || |||||||| || ||||| |||||| Sbjct 3118 GACAAGGAGGGCATCCCACCAGATCAGCAGAGGCTGATCTTTGCTGGTAAACAGTTGGAA 3177 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCAC 28757 ||| | ||| |||| ||||||||||| |||||| | || || |||||| Sbjct 3178 GATGGAAGGACTCTGGCTGATTATAACATCCAAAAA-AGTCCACCCTGCAC 3227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425003510334600