Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq34317 132 5e-26 seq34118 113 5e-20 seq34052 91.5 2e-13 >seq34317 Length=297777 Score = 132 bits (146), Expect = 5e-26 Identities = 141/185 (76%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 161581 CACGGGTACTTCGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTG 161640 || || || || |||| |||| |||||||| ||| ||||||||||| || ||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 161641 CACTTCTTCCTTGCTGCTTGGCCTGT-----TGTTGGCATCTGGTTCACTGCACTGGGCG 161695 ||||||||| | | |||||||||||| || || ||||||||||| || | || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 161696 TAAGCACCATGGCATTCAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTC 161755 | |||| |||||||||||||| || |||||||| |||||||| || | |||||||||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 161756 AGGGT 161760 | ||| Sbjct 200408 AAGGT 200412 >seq34118 Length=323312 Score = 113 bits (124), Expect = 5e-20 Identities = 205/299 (69%), Gaps = 1/299 (0%) Strand=Plus/Minus Query 162544 TTCTT-ATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCA 162602 ||||| || ||||| | || || || |||||||| || || || || || ||| Sbjct 7056 TTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCA 6997 Query 162603 GCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTT 162662 | || || |||| | | ||||| | |||||||| ||||| ||||| | | || ||| Sbjct 6996 ACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCATTT 6937 Query 162663 CACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTG 162722 || |||||||| || | ||| | | || ||| ||||| | ||||||||||| | Sbjct 6936 CATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCT 6877 Query 162723 ACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGAC 162782 || || |||||||| | | ||||| || || ||||| || || || ||| | Sbjct 6876 ACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTTAAG 6817 Query 162783 TCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGAT 162841 | || || |||||||| ||||| ||| ||||||| |||| ||| ||||| || || Sbjct 6816 CCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAAAT 6758 >seq34052 Length=92402 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/156 (74%), Gaps = 8/156 (5%) Strand=Plus/Minus Query 160879 TGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATG 160938 ||||||||| | |||||||| || ||||| ||||| |||| ||||| || || ||||| Sbjct 71617 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 71558 Query 160939 ATTCCCTGCTTGCTCG-CTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCCCC 160997 || |||| ||| | | | || | |||| || ||||||||| ||| |||||| || Sbjct 71557 AT-CCCTACTTTATTGACCGC-AGTATTTATT-----ATTGCCTTCATTGCTGCTCCTCC 71505 Query 160998 TGTGGACATCGACGGCATTCGTGAACCCGTCGCTGG 161033 || || || || || ||||||||||| || |||| Sbjct 71504 AGTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 71469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547217254584000