Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq34052 98.7 3e-16 seq30018 91.5 4e-14 >seq34052 Length=92402 Score = 98.7 bits (108), Expect = 3e-16 Identities = 115/156 (74%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 18659 TCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAAT 18718 ||| || ||||| |||||||||||||| || || || ||||||||||||| || ||||| Sbjct 71468 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAAT 71527 Query 18719 CAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCAC 18778 | |||| ||||||| || | | ||||||||| | || |||||||| || | Sbjct 71528 AATAAAT------ACTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAAT 71581 Query 18779 GTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACA 18814 ||| || ||||| | || || || | ||||| ||| Sbjct 71582 GTAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 71617 >seq30018 Length=17342 Score = 91.5 bits (100), Expect = 4e-14 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| |||| || ||| ||||||| || || ||||| | |||||| || Sbjct 7302 CCATGCATAGCACATAATAGAGAGCCATCGAATACACCAGCTACACCTAACATATGAAAT 7243 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGT 18331 || ||| |||| | ||||| ||||| ||| |||| | ||||||||||||||| Sbjct 7242 GGGTGCGTAAGAGTGTTGTGCTCGGCCTGGGATACAATCATGAAATTGAAAGT 7190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151179319475600