Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq34118 163 4e-35 seq33222 125 9e-24 seq34415 96.9 4e-15 seq33604 93.3 5e-14 seq34317 86.0 8e-12 >seq34118 Length=323312 Score = 163 bits (180), Expect = 4e-35 Identities = 225/315 (71%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 101996 AGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGG 102055 ||||||| ||||| || |||| || |||| |||||||||||| ||||| ||| || | Sbjct 6756 AGATTTGGGACCAAAAGTGGTTAGCAGTAATCATTGAATAAGTTTCTTCAGATTGAGTTG 6815 Query 102056 AATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAG 102115 | || || ||| || ||||| |||||| |||||| | | ||| || || || | Sbjct 6816 GCTTAAAAGCACAGAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGG 6875 Query 102116 TGACACCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATAT 102175 | |||| || || || | |||| || |||| | ||| |||| |||||||||| Sbjct 6876 TAGCACCATGAATAGCGCATAGCAAGGCAGTGCCCAATACACCGACAACTCCCATCATAT 6935 Query 102176 GGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCG 102235 | ||||||| | ||||| ||||| || || || | ||||| | | ||| |||||| | Sbjct 6936 GAAATGGGTACAATGTCCAATTATGAAACCCTTGAAAAAAGAGGATGGATCGAAATATAG 6995 Query 102236 CTGCAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAA 102295 ||| |||||||| |||||||||||||||| ||||| || || ||||| || | | Sbjct 6996 TTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAAGA 7055 Query 102296 ACACACTGACAAAAA 102310 | ||| ||||||| Sbjct 7056 ATACAGAAACAAAAA 7070 >seq33222 Length=111615 Score = 125 bits (138), Expect = 9e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 102022 GTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCT 102081 ||||||||||||||||| ||||| ||| || | | || || ||| || ||||| Sbjct 60345 GTAACCATTGAATAAGTTTCTTCAGATTGAGTTGGGTTAAAAGCGCGGAATGTATTTGCA 60404 Query 102082 TGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATTGCTGACAGCAGT 102141 ||||||||||||| | | ||| || || | ||| |||| || || | | |||| Sbjct 60405 CCATCACCATCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGTGCATAGCAAG 60464 Query 102142 GCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGG 102201 | | |||| | ||| ||||| ||||||||||| |||||||| | ||||| ||||| Sbjct 60465 GGAGCACCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGA 60524 Query 102202 AAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAA 102248 || || || | |||| | ||||| |||||| ||||| |||||||| Sbjct 60525 AACCCTTGAAAAAAGATGATGAATCGAAATATAGCTGCTACACCAAA 60571 >seq34415 Length=341782 Score = 96.9 bits (106), Expect = 4e-15 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 ||| || || ||||| | || || ||||| | | | || || | | ||| | |||||| Sbjct 214114 ATCTGAGGTCGGGTAAGAGACACAAGTCAGCAAATATCCCTCTCCCATTTGGTTGTCATC 214055 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 ||||| ||| ||| |||||| |||| ||| ||| | ||||| ||||||||||| | Sbjct 214054 AAGAAACGATCCATCAGATTGATCAACAGAACCGGATGCGATCTTCCCAGCACAAGTGCA 213995 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993 || |||||||| | || ||||| ||||| || | ||||| | || |||| ||| || Sbjct 213994 GCATGCACCAGCCCTGCAAGAATAGGGCAGGTCCATCCCTGCCGCCTCTGCAGAGTCCAG 213935 Query 102994 AATATA 102999 || || Sbjct 213934 GATGTA 213929 >seq33604 Length=95044 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 103709 CCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTAT 103768 || ||||| | ||||||| |||||| ||||||| ||||| ||||||||||| |||||| Sbjct 23352 CCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTAT 23293 Query 103769 GCGACACAGATCCAGGGGCGCATGCCCAGACGGTAG 103804 || ||| ||||| |||||||| |||||| | ||| Sbjct 23292 GCAACAACAATCCAAGGGCGCATACCCAGATGATAG 23257 >seq34317 Length=297777 Score = 86.0 bits (94), Expect = 8e-12 Identities = 78/97 (80%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 103269 CACGACCCTGACCATCAAGGATGGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCA 103328 ||||||| |||| ||||| | ||| |||||||| ||||| ||||| |||||||| |||| Sbjct 200416 CACGACCTTGACTATCAACTACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCA 200357 Query 103329 TGGTGCTAACACCAAGTGCGGTGAACCAGATACCCAC 103365 | |||| | ||| | ||| ||||||||||||| || Sbjct 200356 TAATGCTGATACCTAAAGCG-TGAACCAGATACCTAC 200321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632900675592000