Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq33291 125 8e-24 seq31551 107 2e-18 seq34317 100 3e-16 seq34118 100 3e-16 seq33933 89.7 6e-13 seq33222 82.4 9e-11 >seq33291 Length=173966 Score = 125 bits (138), Expect = 8e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| || ||||| || || |||| ||||||||||| ||||| || Sbjct 161262 TGAGCAGTGCAAATGTTGCTTGTTGCCTTATCCCTTCGGATATGCTGCTCCCTAGTCTGC 161203 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGAC--CTACAATTCTGC 139434 | ||| | ||| ||||| || || | || | ||||||| | | |||||| | Sbjct 161202 ATTGCCATTCTTAGAGCAGGCTTCCCAGAGGAATCAA--GACTGACACCAATAATTCTCC 161145 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 | || ||| ||||||| |||| | | ||| || ||||| || |||||||||||||| | Sbjct 161144 CGGGCATCATTCTCTTGTACTCTTGGGATGTGGCCAAGAAAGCCGCATGAGGACCTCCAT 161085 Query 139495 ATCCCATAGGAATACCAAACCTTTG 139519 | |||||||||| ||||||||| || Sbjct 161084 AACCCATAGGAACACCAAACCTCTG 161060 >seq31551 Length=26745 Score = 107 bits (118), Expect = 2e-18 Identities = 172/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| || || |||||||| || | |||||||||||| || || || Sbjct 14612 TGGGCAGTGCAAATGTTGCTTGTAGCTTTGTCCCTACGAATATGCTGCTCCCTGGTCTGC 14671 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | ||| | | ||||| || || | || |||| || ||| | ||| || | Sbjct 14672 ATTGCCATACGCAGAGCAGGCTTCCCAGAGGAATCAACACTAAC--ACCAATAATCCTTC 14729 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| ||||||| |||| | | ||| || ||||| |||||||| || ||||| | Sbjct 14730 CAGGCATCATTCTCTTGTACTCTTGAGATGTGGCCAAGAAAGCAGCATGGGGCCCTCCAT 14789 Query 139495 ATCCCATAGGAATACCAAACCTTT--GCATACTACCTACAGCAATATCAAATCCCCACTC 139552 | ||||| |||| |||||||| | ||| || || || |||||||| ||| | || Sbjct 14790 ACCCCATGGGAACCCCAAACCTCTGAGCAGAC--CCAACCACAATATCAGCCCCCAATTC 14847 Query 139553 ACC 139555 ||| Sbjct 14848 ACC 14850 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 138158 TACAAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCC 138217 || |||||||| | ||| || |||||||||||||| | ||||||||| || || || Sbjct 11311 TAGAAATGGTGCCAAATGCTTCTTCACACCAATAGGACCCATGCCAGGACCGCCTCCACC 11370 Query 138218 ATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 || ||||| ||||| || || || | ||||||||| || ||||| |||||| Sbjct 11371 GTGAGGAATGCAGAACGTTTTGTGGAGATTTAGATGGCAAACATCGGCACCA 11422 >seq34317 Length=297777 Score = 100 bits (110), Expect = 3e-16 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 124156 ATCAACAACTGATTGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACC 124215 |||||| || |||||||| || |||||||| || | |||||||||||| ||| |||||| Sbjct 200403 ATCAACTACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAATGCTGATACC 200344 Query 124216 CATAGAGGTTAACC--ATAC---ACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGA 124270 | || || |||| |||| | ||| ||||| || | ||| ||||||||| | Sbjct 200343 TAAAG-CGTGAACCAGATACCTACCCTACTACAGGCCAAGCAACTAAGAAGAAGTGTAAC 200285 Query 124271 CTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCT 124330 | ||||||||||| |||||| |||||||| | ||||||| ||||| ||| || Sbjct 200284 GAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATTGACCAAAATAACCATGTTCT 200225 >seq34118 Length=323312 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 123271 GTCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACC 123330 ||||||| | || || || | || || ||||||||||| || ||||| || || || Sbjct 6850 GTCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATAGCGCATAGCAAGGCAGTGCC 6909 Query 123331 TAGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTG 123390 | || || |||| |||||||| |||||||| | |||||| || || || ||||| Sbjct 6910 CAATACACCGACAACTCCCATCATATGAAATGGGTACAATGTCCAATTATGAAACCCTTG 6969 Query 123391 TATGAATAAGATATAACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACT 123450 | || | ||| | ||||| || | ||| ||||| || || || |||||||||| Sbjct 6970 AAAAAAGAGGATGGATCGAAATATAGTTGCTACACCAAAACTAGGCGCAAAGAACCAACC 7029 Query 123451 GTGCTGACCTAGTGGATAGATCA 123473 ||||||||| ||||| |||| Sbjct 7030 AGACTGACCTAGCGGATAAATCA 7052 >seq33933 Length=146745 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 124763 AACCATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTT 124822 |||||||||||||| | ||| |||||||| |||||||| ||||||| || ||||| Sbjct 32971 AACCATTCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCA 32912 Query 124823 GATGATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCC 124876 || | |||| ||| ||||||||||| || ||||| || || | | ||| ||| Sbjct 32911 GAAGTCGGAATAACAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCCC 32858 >seq33222 Length=111615 Score = 82.4 bits (90), Expect = 9e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 123272 TCTTCATACAATGTGTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCT 123331 |||||| | || || || | | || ||||||||||| | ||||| || | |||| Sbjct 60414 TCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGTGCATAGCAAGGGAGCACCC 60473 Query 123332 AGTATTCCTGCAACACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGT 123391 | || || ||||| |||||||| |||||||| |||||||| || || || ||||| Sbjct 60474 AATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGAAACCCTTGA 60533 Query 123392 ATGAATAAGATATAACGAAAGATTGCTGCGACACCGAA 123429 | || | ||| | ||||| || ||||| ||||| || Sbjct 60534 AAAAAGATGATGAATCGAAATATAGCTGCTACACCAAA 60571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578438219048000