Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq34118 145 1e-29 seq34317 129 8e-25 seq33222 107 3e-18 >seq34118 Length=323312 Score = 145 bits (160), Expect = 1e-29 Identities = 220/313 (70%), Gaps = 0/313 (0%) Strand=Plus/Plus Query 23677 AGATTTGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGG 23736 ||||||| |||||||| | || || |||| ||| ||||| || || || ||||| | Sbjct 6756 AGATTTGGGACCAAAAGTGGTTAGCAGTAATCATTGAATAAGTTTCTTCAGATTGAGTTG 6815 Query 23737 AATCGAACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAG 23796 | || || || || ||||| || || |||||| | | ||||| || || | Sbjct 6816 GCTTAAAAGCACAGAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGG 6875 Query 23797 TAACTCCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATAT 23856 || | ||||||||||| | || | || |||| || ||| ||||||||||||||| Sbjct 6876 TAGCACCATGAATAGCGCATAGCAAGGCAGTGCCCAATACACCGACAACTCCCATCATAT 6935 Query 23857 GGAAGGGGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCG 23916 | || |||| | ||||| |||||||| || || | ||||| | | | | || || | Sbjct 6936 GAAATGGGTACAATGTCCAATTATGAAACCCTTGAAAAAAGAGGATGGATCGAAATATAG 6995 Query 23917 CCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGA 23976 || ||||| ||||| ||||||||||||||| ||||| || | ||||| || | || Sbjct 6996 TTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAAGA 7055 Query 23977 ATACAGACACGAA 23989 ||||||| || || Sbjct 7056 ATACAGAAACAAA 7068 >seq34317 Length=297777 Score = 129 bits (142), Expect = 8e-25 Identities = 145/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 26828 CACGACCCTGTGAATCAATCACAGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCA 26887 ||||||| || ||||| || || || ||||| ||||||||||| || ||||| |||| Sbjct 200416 CACGACCTTGACTATCAACTACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCA 200357 Query 26888 TCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA-----ACGGGCCATGCAGCAAG 26942 | || | ||| | ||| |||||||||| || || || ||||| ||| | | Sbjct 200356 TAATGCTGATACCTAAAGCG-TGAACCAGATACCTACCCTACTACAGGCCAAGCAACTAA 200298 Query 26943 GAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAACGACCGAA 27002 ||||||||| || ||||| ||||||||||| |||||||||||||||||| |||| || Sbjct 200297 GAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATTGACCAAA 200238 Query 27003 GTAGCCATGTGCT 27015 || |||||| || Sbjct 200237 ATAACCATGTTCT 200225 >seq33222 Length=111615 Score = 107 bits (118), Expect = 3e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 23703 GTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACGCTTTAAAAGTGTTTGCC 23762 |||||||| ||||| || || || ||||| | | || || || || ||||| Sbjct 60345 GTAACCATTGAATAAGTTTCTTCAGATTGAGTTGGGTTAAAAGCGCGGAATGTATTTGCA 60404 Query 23763 TGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCATGAATAGCAGAGAGAAGT 23822 || ||||||||| | | ||||| || | |||| | |||||||||| | || | Sbjct 60405 CCATCACCATCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGTGCATAGCAAG 60464 Query 23823 GCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGCGTCCAGTTATGA 23882 | | |||| || ||| ||||||||||||||||| || ||||| | ||||| |||||| Sbjct 60465 GGAGCACCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGA 60524 Query 23883 AAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAACTCGGCGCA 23939 || || || | |||| | ||| | || || || || ||||| ||||| |||||| Sbjct 60525 AACCCTTGAAAAAAGATGATGAATCGAAATATAGCTGCTACACCAAAACTAGGCGCA 60581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664850534168000