Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq34345 140 4e-28 seq33599 120 4e-22 seq34050 107 2e-18 seq34342 95.1 1e-14 seq33753 93.3 5e-14 seq33462 93.3 5e-14 seq34321 86.0 7e-12 seq33558 86.0 7e-12 seq32253 86.0 7e-12 >seq34345 Length=307576 Score = 140 bits (154), Expect = 4e-28 Identities = 299/447 (67%), Gaps = 0/447 (0%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| || | ||| | |||||||| | | || | ||| || ||||| Sbjct 56399 GAGGTGGTGGAGTTCTTAAAGAAGCCCGAGAGGTTTACTGCAGTTGGAGCACGCATCCCT 56458 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| || ||||| || |||||||| || ||| |||||| Sbjct 56459 AAAGGAGTTCTTCTTGTCGGTCCTCCTGGTACCGGGAAGACCCTACTAGCCAAAGCCATA 56518 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| || ||| || | || | || | ||||| ||||||||| Sbjct 56519 GCTGGTGAAGCCGGTGTTCCTTTCTTCTCGATTTCAGGTTCAGAATTTGTCGAGATGTTT 56578 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| ||||| | || || || || || | | ||| ||||| || Sbjct 56579 GTTGGTGTCGGTGCATCTCGTGTCCGTGACCTTTTCAAGAAAGCCAAGGAAAACGCTCCC 56638 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATG 175530 || ||||| || ||||||| |||||||| || || |||| | | | ||| | Sbjct 56639 TGCATTGTATTTGTTGATGAAATTGATGCTGTTGGGCGGCAAAGAGGAACCGGTATTGGC 56698 Query 175531 CCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || |||||||||||||| ||||| | || ||||| || || || ||||| || ||| Sbjct 56699 GGAGGGAATGACGAGAGAGAGCAAACCCTAAACCAACTCCTGACAGAAATGGACGGTTTT 56758 Query 175591 GACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGAC 175650 || | || || || | |||||||| ||||||||||| | ||||| ||||| Sbjct 56759 GAAGGAAACACCGGAATCATAGTTATTGCCGCCACTAATCGTGCTGATATTCTTGACTCA 56818 Query 175651 GCCCTCCTTCGCCCGGGTCGTTTTGAT 175677 ||| | | | || ||||| |||||| Sbjct 56819 GCCTTGTTGAGGCCTGGTCGGTTTGAT 56845 >seq33599 Length=161954 Score = 120 bits (132), Expect = 4e-22 Identities = 203/289 (70%), Gaps = 15/289 (5%) Strand=Plus/Plus Query 64957 TACATTAAGGATGGATCTGAAAAGAAGCA---GTTATTTGAAGCCATCCAAACTGTACCA 65013 ||||| |||||| |||||| ||||| | ||| || | || || | ||||| || Sbjct 157492 TACATCAAGGAT---TCTGAAGAGAAGGATAGGTTGTTCCACGCGATTGATACTGTGCCC 157548 Query 65014 TGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGC--TCCT 65071 ||| | ||||||||||| || ||||| | ||| |||| | |||| || | Sbjct 157549 TGTGTGGAGAAGAAGGCTAAGTGGGCTCTCCGTTGGATTGAT-----GGCTCGGAATCAT 157603 Query 65072 TCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCT 65131 |||| ||||| | || || || || ||||| ||||| ||||||||||| ||| || | Sbjct 157604 TCGCTGAGCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTTT 157663 Query 65132 GCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAAC 65191 | ||||| | ||| |||| ||||| ||| | ||||| || | | |||||| ||||| Sbjct 157664 GTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAATGAGT 157723 Query 65192 TTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA-GCTCT 65239 | || || ||||||||||| | ||| || |||| |||| | ||||| Sbjct 157724 TGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTG-CGTGCATGCTCT 157771 >seq34050 Length=239353 Score = 107 bits (118), Expect = 2e-18 Identities = 129/173 (75%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || ||||| ||||| | || || ||||| ||||| ||||| ||||||||||| ||| Sbjct 39420 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 39479 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || || ||||| | ||| |||| ||||| ||| | ||||| || ||| |||||| ||| Sbjct 39480 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTATCCTTCTCGAAT 39539 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGA-GCTCT 65239 || | || || ||||||||||| | ||| || |||| |||| | ||||| Sbjct 39540 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTG-CGTGCATGCTCT 39591 >seq34342 Length=184756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 177772 CCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATACATACCATAGGAT 177831 || |||||||| |||||||| ||||||||||||||| |||||| | || || |||| | Sbjct 103334 CCGCGTCTCGGGGATTCGTGATTGAAGAGGATTCCGTTGCAGGCGAAGATCCCGTAGGCT 103275 Query 177832 TCTCGGTAATTTTTGACGAGCCAGTGAGCGGCCAATTTGGAGACGCCATAGACGGATCGT 177891 ||||||||||| | | ||| || || || ||||||| || | ||| |||| Sbjct 103274 TCTCGGTAATTCACGGTGTACCAATGCGCCGCGCATTTGGACACCGCGTAGGGAGATCTC 103215 Query 177892 GGGTAGAAGGGTGTCTCCTCAGTTTGTGGAGTTTCTCGGACTTTA-CCAAACATCTCCGA 177950 || | ||| || ||| ||| | ||| || | |||| | | || ||||||||||| Sbjct 103214 GGATGGAAAGGAGTCGACTCCGATTGCGGCG----GCGGAGTGGATCCGAACATCTCCGA 103159 Query 177951 AGTTGAGGCTTGGTA 177965 | | ||||||||| Sbjct 103158 CGATCCGGCTTGGTA 103144 >seq33753 Length=114126 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 || ||||| ||||| | || || ||||| ||||| ||||| ||| ||||||| ||| Sbjct 59581 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCATCTTCTCTGGGAGT 59640 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || || ||||| | ||| |||| ||||| ||| | ||||| | | | |||||| ||| Sbjct 59641 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGAGTTGTCCTTCTCGAAT 59700 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 || | || || ||||||||||| | ||| || ||||| Sbjct 59701 GAGTTGATCTCGCGAGATGAGGGGTTGCACTGCGATTTTGC 59741 >seq33462 Length=126448 Score = 93.3 bits (102), Expect = 5e-14 Identities = 190/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| | || |||| | || ||||| | || |||||| Sbjct 81508 CCTGGAACTGGGAAGACCCTTTTGGCTAGAGCAGTGGCTGGTGAGGCTGGGGTTCCATTC 81449 Query 175375 AT--CCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGG 175432 | || ||||| || || | ||||||||| | ||||| |||||||| || || | Sbjct 81448 TTTTCCTGTGCT--GCTTCAGAGTTTGTGGAGTTATTTGTGGGTGTGGGGGCTTCCAGAG 81391 Query 175433 TTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 | | ||| | ||||| | ||| | ||| | || || ||||| |||||||||||| Sbjct 81390 TGAGGGATTTGTTTGAGAAGGCCAAGTCTAAAGCCCCC-TGCATTGTGTTCATTGATGAG 81332 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAA 175551 |||||||| ||||| | ||| | | || || | | | |||||| || ||||| Sbjct 81331 ATTGATGCAGTGGGGAGGCAGAGAGGAGCAGGGCTTGGGGGTGGAAATGATGAAAGAGAG 81272 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTT 175589 || || |||||||| || | || || |||||||| || Sbjct 81271 CAGACTATTAATCAGCTCTTGACTGAAATGGATGGGTT 81234 >seq34321 Length=180555 Score = 86.0 bits (94), Expect = 7e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAAC 75185 || |||| ||||| || ||| |||||| ||||||||||||| | | || |||| || Sbjct 112970 CGAGACTTTGATTATGATTATTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTCTTGAA- 112912 Query 75186 GGCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCA 75245 || || | || | | |||||| ||||| ||||||| ||| | || | | || | Sbjct 112911 GGTTC-AGGGAAAAGTTGTGGAAAGGCCACAACACATGTTGATGAGAGTTTCTGTTGGGA 112853 Query 75246 TCCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 | ||| | | || ||||| |||| | | |||||| | |||||| ||| | || Sbjct 112852 TTCACAAGAATGATATTGAATCTGCCATCAGGACATATCATTTGATGTCTCAACGATGGT 112793 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| ||| || | ||||| || || |||||||| || ||||| || ||| Sbjct 112792 TCACTCATGCTTCTCCAACACTTTTTAATGCTGGCACTCCAAGGCCCCAG 112743 >seq33558 Length=55639 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || || || |||| |||| | || ||| || | || ||||||||| | ||||||||| Sbjct 42572 TTTTGTGCCATTTTTTGGCTTAAAAAGAGGTGCCTAATGCCAGGCTTGGCATTCTCAAAT 42631 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 |||||||||||| ||||||||||||| ||| || |||||| Sbjct 42632 GAACTTATTTCCAGAGATGAGGGTCTACACTGTGACTTTGCC 42673 >seq32253 Length=54634 Score = 86.0 bits (94), Expect = 7e-12 Identities = 295/452 (65%), Gaps = 11/452 (2%) Strand=Plus/Plus Query 175235 TTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAG 175294 ||||| | ||||| ||| | ||| | | |||| | | || ||||| || ||| | Sbjct 15508 TTGTGCACTTTCTAAAGAACCCCAAAAAATATGAAGAATTAGGAGCCAAAATTCCCAAGG 15567 Query 175295 GCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGG 175354 | || ||||| | |||| || ||||| |||||||| || || || ||||| || | Sbjct 15568 GGGCTCTTCTTGTGGGTCCTCCTGGTACTGGAAAGACACTACTAGCTAAAGCCACGGCAG 15627 Query 175355 GTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 | ||||| ||| || || || ||||| || | ||| ||||||||||||||| Sbjct 15628 GAGAATCTGGTGTGCCTTTTCTCTCCATCTCTGGGTCAGATTTTATGGAGATGTTTGTTG 15687 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATC-TCTTTGAAATCGCCCGCGAAAATCAACCATGT 175473 | || || | |||||| | || | | ||| || || | || | ||| || Sbjct 15688 GAGTTGGGCCTGCTAGGGTTAG-GAGCTTATTTCAAGAGGCAAGACAATGTGCACCTAGT 15746 Query 175474 ATTGTCTTCATTGATGAGATTGATGCGGTGGGCA-AGCAACGCAGCGCTGGTGGTATGCC 175532 || | ||||||||||||||||||||| | |||| ||||| | || ||||||| | | Sbjct 15747 ATAATTTTCATTGATGAGATTGATGCGATTGGCAGAGCAAGGGGACG-TGGTGGTTTTTC 15805 Query 175533 A---GCAAATGACGA--GAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 | | |||| || | |||| | ||| | ||||| || | ||||||||||| Sbjct 15806 AGGTGGGCATGATGAACGTGAGAGC--ACATTAAATCAGCTTTTAGTGGAGATGGATGGA 15863 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||| | | | || | || || |||| | || ||| | ||||| ||||| Sbjct 15864 TTTCAGACCACATCAGGTGTGGTTGTGCTTGCTGGAACAAATAGGCCTGATATTCTTGAC 15923 Query 175648 GACGCCCTCCTTCGCCCGGGTCGTTTTGATCG 175679 ||||| | | || |||||||||||||| Sbjct 15924 AGAGCCCTGTTGAGGCCAGGTCGTTTTGATCG 15955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595992418912000