Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq34317 149 7e-31 seq34118 149 7e-31 seq33222 140 4e-28 seq30961 91.5 2e-13 seq33933 84.2 2e-11 >seq34317 Length=297777 Score = 149 bits (164), Expect = 7e-31 Identities = 147/189 (78%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 166474 CATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTG 166533 |||||||| || |||| |||||||||||||| ||| ||||||||||| || || || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 166534 CACTTCTTCCTTGCTGCATGGCCTGT-----TGTCGGCATCTGGTTCACCGCCCTTGGCG 166588 ||||||||| | | ||| |||||||| || || |||||||||| ||| | || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 166589 TCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTC 166648 || || |||||||||||||| ||||||||||| |||||||| ||| | ||||| ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 166649 AGGGTCGTG 166657 | ||||||| Sbjct 200408 AAGGTCGTG 200416 >seq34118 Length=323312 Score = 149 bits (164), Expect = 7e-31 Identities = 208/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 167449 TATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTC 167508 ||||| || ||||| | ||||||||||| || || || || || | || || Sbjct 7047 TATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAACTATATTT 6988 Query 167509 CGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATG 167568 |||| | ||||||| | ||||| || || || |||||| || | ||||||||||||||| Sbjct 6987 CGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCATTTCATATGATG 6928 Query 167569 GGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAG 167628 || || | ||| | |||| ||| ||||| | || || ||||||| ||| ||||| Sbjct 6927 GGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCTACCGTAGAA 6868 Query 167629 AATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAG 167688 |||||||| | |||||| ||||| ||||| || || || || | | ||||| Sbjct 6867 AATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTTAAGCCAACTCAA 6808 Query 167689 GAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCT 167740 ||||| |||||||||||| |||| || |||| || ||||| || |||| Sbjct 6807 TCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 167488 TTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACA 167547 || || || || || || || |||||| || |||| | ||||| || || || |||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 167548 CTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCA 167607 |||| ||||||||||||||||| || || ||| | |||||| | | ||||| | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 167608 ATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTT 167667 || ||||||| ||| |||| |||||||| | |||||||||||| ||||| || || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 167668 AAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTAC 167714 || || | | ||||| ||||| ||||||||||||||||| Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq30961 Length=93052 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||||||||||||||| Sbjct 11320 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAAT 11379 Query 18188 CCTACCTGGGGAG 18200 ||||| ||||||| Sbjct 11380 CCTACTTGGGGAG 11392 >seq33933 Length=146745 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 165925 GGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCA 165984 || |||||| | || || ||||| || ||||||||||| ||| |||| |||| || Sbjct 32859 GGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGCAGCT 32918 Query 165985 ATTGGTCTACACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAATGG 166035 || ||| ||||||| || || || |||||||| ||||| |||| |||||| Sbjct 32919 ATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGG 32969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560704992560000