Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq34052 105 2e-18 seq34317 93.3 1e-14 seq30018 80.6 8e-11 >seq34052 Length=92402 Score = 105 bits (116), Expect = 2e-18 Identities = 117/155 (75%), Gaps = 6/155 (4%) Strand=Plus/Minus Query 42292 TGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATG 42351 ||||||||| | || ||| | ||||||||||| |||| ||||||||||| ||||| Sbjct 71617 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 71558 Query 42352 ATTCCCTGTCTGCTCGCTGCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCG 42411 | ||||| | | | ||| | |||||| | || ||||||||||| ||||| Sbjct 71557 A-TCCCTACTTTATTG-----ACCGCAGTATTTATTATTGCCTTCATTGCTGCTCCTCCA 71504 Query 42412 GTAGACATTGATGGCATTCGTGAACCTGTCTCTGG 42446 ||||| |||||||| |||||||||||||| ||||| Sbjct 71503 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 71469 >seq34317 Length=297777 Score = 93.3 bits (102), Expect = 1e-14 Identities = 132/182 (73%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 42994 CATGGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTT 43052 |||||||| ||||| | | |||||||||||||| | |||| || || ||| || || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGC-TAGTTTCAACAACTCTCGTTCGTT 200287 Query 43053 GCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGG-----ATTTGGTTCACTTCTCTTGGC 43107 |||||||| | | |||||||| || || ||| || |||||||| || | || Sbjct 200288 ACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGT 200346 Query 43108 GTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAAT 43167 |||| | |||||| || ||| | || ||||| || || |||||||| | ||||||| | Sbjct 200347 ATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGT 200406 Query 43168 CA 43169 || Sbjct 200407 CA 200408 >seq30018 Length=17342 Score = 80.6 bits (88), Expect = 8e-11 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 42775 ACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTCCAT 42834 || ||||| |||||| | || | |||||| || || |||| ||||| ||| || || ||| Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 42835 ATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 ||| | ||||| || || ||||| | ||| || | || | |||||||||||| Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGGT 7303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143400875415200