Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq34317 87.8 2e-12 >seq34317 Length=297777 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/175 (71%), Gaps = 6/175 (3%) Strand=Plus/Plus Query 155674 CATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTT 155733 ||||| || || |||| | |||||||| ||||| ||||||||||| | | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 155734 CACTTCTTCCTTGCTGCATGGCCTGT-----GGTCTGCATCTGGGCAACTGCTATGGGTG 155788 ||||||||| | | ||| |||||||| ||| | |||||| || ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGTA 200347 Query 155789 TGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA 155843 | | |||||||||||||| ||||||||||| |||||||| || ||||| || Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGA 200402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584269371944000