Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq30018 89.7 1e-13 seq34052 82.4 2e-11 >seq30018 Length=17342 Score = 89.7 bits (98), Expect = 1e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | || ||| | || || || || || || | |||||| ||| Sbjct 7302 CCATGCATAGCACATAATAGAGAGCCATCGAATACACCAGCTACACCTAACATATGAAAT 7243 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||||| | ||| ||||||| || || ||| | |||| |||||| ||||| |||| | Sbjct 7242 GGGTGCGTAAGAGTGTTGTGCTCGGCCTGGGATACAATCATGAAATTGAAAGTTCTAAAA 7183 Query 41037 ATTCCTAAAGGCATACCAT 41055 || |||||||||||||| Sbjct 7182 TTTTTTAAAGGCATACCAT 7164 >seq34052 Length=92402 Score = 82.4 bits (90), Expect = 2e-11 Identities = 111/155 (72%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 41358 CCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATT 41417 || ||||| || ||||| || ||||| |||||||| || || || || || ||||| || Sbjct 71469 CCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATA 71528 Query 41418 ATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACG 41477 || || || ||| | ||| | || ||||| | ||||||||||| || | | Sbjct 71529 ATAAATACTGCGGTC------AATAAAGTAGGGATCATCAAAACACCAAACCATCCAATG 71582 Query 41478 TATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACA 41512 || || ||||| || ||||| || | ||||||||| Sbjct 71583 TAAAGACGGTTTTCAGTGCTGGTTATCCAGTTACA 71617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143570319531600