Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq34317 114 1e-20 >seq34317 Length=297777 Score = 114 bits (126), Expect = 1e-20 Identities = 131/175 (75%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 67470 TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCC 67529 ||||| |||||||||||||| ||||||||||| ||||||||||||||| | | ||| Sbjct 200402 TCAACTACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAATGCTGATACCT 200343 Query 67530 ATTGCAGTGAACCAGATGCAGACC-----ACAGGGAATGCAGCAAGGAAGAAGTGAAGAC 67584 | || ||||||||||| | ||| ||||| | ||| | | ||||||||| | Sbjct 200342 AAAGC-GTGAACCAGATACCTACCCTACTACAGGCCAAGCAACTAAGAAGAAGTGTAACG 200284 Query 67585 TTCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATG 67639 | |||||||||||| ||||| ||||||||||| |||| || || ||||| Sbjct 200283 AACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATTGACCAAAATAACCATG 200229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566398678584000