Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq34118 185 1e-41 seq33222 159 4e-34 seq34317 136 5e-27 seq30018 95.1 1e-14 seq34052 93.3 5e-14 seq33604 93.3 5e-14 seq30961 89.7 6e-13 seq33933 87.8 2e-12 seq31051 82.4 9e-11 >seq34118 Length=323312 Score = 185 bits (204), Expect = 1e-41 Identities = 230/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Plus Query 66877 AGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAG 66936 |||| || ||||| ||| |||| ||||||| |||||| ||||||||||| |||||| | Sbjct 6756 AGATTTGGGACCAAAAGTGGTTAGCAGTAATCATTGAATAAGTTTCTTCAGATTGAGTTG 6815 Query 66937 AGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTG 66996 | || || ||| || ||||| ||||| |||||| | | |||||| ||||| | Sbjct 6816 GCTTAAAAGCACAGAATGTATTTGCACCATCACCGTCTTCAAATAAAGTATTTTCTACGG 6875 Query 66997 TAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATAT 67056 || |||||||||| || | ||||| ||| |||| | ||| | || |||||||||| Sbjct 6876 TAGCACCATGAATAGCGCATAGCAAGGCAGTGCCCAATACACCGACAACTCCCATCATAT 6935 Query 67057 GAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTG 67116 |||| |||| ||| ||||| ||||| || ||||| | ||||| | | ||||||| || | Sbjct 6936 GAAATGGGTACAATGTCCAATTATGAAACCCTTGAAAAAAGAGGATGGATCGAAATATAG 6995 Query 67117 CTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAA 67176 || || || ||| || || || ||||||| || ||||| || || || || | | Sbjct 6996 TTGCTACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGCGGATAAATCAAGA 7055 Query 67177 AGACACTAACAAAAA 67191 | ||| |||||||| Sbjct 7056 ATACAGAAACAAAAA 7070 >seq33222 Length=111615 Score = 159 bits (176), Expect = 4e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 66903 GTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCT 66962 ||||||||||| ||||||||||| |||||| | || || || ||| || ||||| Sbjct 60345 GTAACCATTGAATAAGTTTCTTCAGATTGAGTTGGGTTAAAAGCGCGGAATGTATTTGCA 60404 Query 66963 TGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAAT 67022 |||||||||||| | | |||||| |||| ||| |||||||||| | | ||||| Sbjct 60405 CCATCACCATCTTCAAATAAAGTATTTTCTATAGTAGCACCATGAATAGTGCATAGCAAG 60464 Query 67023 GCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGG 67082 | | |||||| | ||| || || |||||||||||||| |||||||| ||||| ||||| Sbjct 60465 GGAGCACCCAATACACCGGCAACTCCCATCATATGAAATGGGTTCAATGTCCAATTATGA 60524 Query 67083 AATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAA 67130 || ||||| | |||| | ||||||||| || |||| || || ||| Sbjct 60525 AACCCTTGAAAAAAGATGATGAATCGAAATATAGCTGCTACACCAAAA 60572 >seq34317 Length=297777 Score = 136 bits (150), Expect = 5e-27 Identities = 139/180 (77%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 67947 ACTATCAAGGATAGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAAC 68006 |||||||| | || |||||||| |||||||| || |||||||||||||| |||| | Sbjct 200406 ACTATCAACTACGGATTGGTTGAAATTGAAACCGTTTAGGTTGAATGCCATAATGCTGAT 200347 Query 68007 ACCAAGTGCAGTGAACCAGATACCAACG-----ACAGGCCATGCAGCAAGGAAGAAGTGC 68061 ||| | || |||||||||||||| || |||||||| ||| | | ||||||||| Sbjct 200346 ACCTAAAGC-GTGAACCAGATACCTACCCTACTACAGGCCAAGCAACTAAGAAGAAGTGT 200288 Query 68062 AGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGT 68121 | |||||| ||||||||||| ||||| |||||||||| |||| || || |||||| Sbjct 200287 AACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATCAATTGACCAAAATAACCATGT 200228 >seq30018 Length=17342 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 68223 GGAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATG 68282 |||||||||||| |||| || ||||| ||| | ||||| ||||| || || | |||||| Sbjct 7306 GGAACCATGCATAGCACATAATAGAGAGCCATCGAATACACCAGCTACACCTAACATATG 7247 Query 68283 GAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGT 68339 || |||||| | || |||||||||| || ||| | || | |||| | |||||||| Sbjct 7246 AAATGGGTGCGTAAGAGTGTTGTGCTCGGCCTGGGATACAATCATGAAATTGAAAGT 7190 >seq34052 Length=92402 Score = 93.3 bits (102), Expect = 5e-14 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Plus Query 68668 CCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACG 68727 |||| ||||||||||||||||||||| || || || || |||||||| |||||||| | Sbjct 71469 CCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAGGCAATA 71528 Query 68728 ATGAAACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACG 68787 || ||| | ||| | | | ||||||||||||| || || ||||| |||| | Sbjct 71529 AT-AAATA-----CTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATG 71582 Query 68788 TAAAGGCGGTTCTCTGTG 68805 ||||| ||||| || ||| Sbjct 71583 TAAAGACGGTTTTCAGTG 71600 >seq33604 Length=95044 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 68377 CCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTAT 68436 || ||||||| || |||| || ||| ||||||| || ||||||||||| || |||||| Sbjct 23352 CCCTGACCGATTGGGTAGATCAAGAAAACTGCGGTAGCAGCTGCAACAGGAGCTGAGTAT 23293 Query 68437 GCAACACAGATCCAAGGACGCATACCAAGACGATAG 68472 |||||| |||||||| |||||||| ||| ||||| Sbjct 23292 GCAACAACAATCCAAGGGCGCATACCCAGATGATAG 23257 >seq30961 Length=93052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 35511 CTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGCTCTGCCGCTG 35570 ||||||| |||||||||||||||||||||| || ||||||| ||| ||||| || ||| Sbjct 11392 CTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTG 11333 Query 35571 AGCTACTGAGGA 35582 |||||||||||| Sbjct 11332 AGCTACTGAGGA 11321 >seq33933 Length=146745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 68557 AACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTT 68616 ||||| ||||||| || ||| ||||||||||| || |||||||| | ||| || || Sbjct 32971 AACCATTCATCAACGGATGCCGCTTCCCAAATTGGGTAAAAGTGTAAACCTATAGCTGCA 32912 Query 68617 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACC 68669 ||| | |||| |||||||||||| || || ||||| || || || || || || Sbjct 32911 GAAGTCGGAATAACAGCACCAGAGATAATATTGTTTCCGTAAAGCAGAGATCC 32859 >seq31051 Length=39587 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/105 (79%), Gaps = 6/105 (6%) Strand=Plus/Plus Query 67974 GAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGT---GCAGTGAACCAGATACC 68030 |||||| || ||||||||||||| ||| ||| ||| | | | ||||||||| ||||| Sbjct 26032 GAAACCGTTTAGGTTGAATGCCA--GTGATAATACCTAATAAAGAAGTGAACCAAATACC 26089 Query 68031 AACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTT 68075 || ||||| || ||||| | ||||||||| | |||||| ||||| Sbjct 26090 TACTACAGG-CAAGCAGCTAAGAAGAAGTGTAACGAACGAGAGTT 26133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571500937368000