Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq33714 136 7e-27 seq31522 127 4e-24 seq34423 87.8 3e-12 >seq33714 Length=161502 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || || || || ||||| | || | |||||| ||||| ||||| Sbjct 21882 ATACCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 21823 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | |||||| | || ||||| |||||||| | |||||||||||| ||| Sbjct 21822 GCAAGAGTGCGTCCATCGTCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 21763 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || || | |||| ||| ||| ||||| || |||| Sbjct 21762 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 21703 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| ||||||||||| || ||||| Sbjct 21702 ACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21653 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| || || || | |||| ||| || ||||||||||| Sbjct 21654 ATACCACCACGCAGACGAAGGACAAGGTGGAGGGTAGACTCCTTTTGGATATTATAGTCT 21595 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| |||||||| | | ||||||||| ||| Sbjct 21594 GCAAGTGTACGGCCATCTTCAAGCTGCTTTCCTGCAAAAATCAGCCGCTGTTGATCTGGA 21535 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| || || | || | ||| ||| ||||| ||| |||| Sbjct 21534 GGAATTCCTTCCTTATCTTGGATCTTTGCCTTAACATTATCAATGGTATCAGAACTCTCA 21475 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || |||||||| || ||||| Sbjct 21474 ACCTCGAGAGTAATAGTCTTTCCAGTAAGAGTCTTTACAAAGATCTGCAT 21425 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | || ||||| || || || | |||| ||| || || || ||||| Sbjct 22110 ATACCACCACGCAGACGAAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCT 22051 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || ||||| |||||||| | |||||||| |||||| Sbjct 22050 GCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGGTCAGGA 21991 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || || | |||| ||| ||| ||||| || |||| Sbjct 21990 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 21931 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||| ||||||||||| || ||||| Sbjct 21930 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21881 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || |||||||| || |||| ||| | |||| ||| || ||| || ||||| Sbjct 23085 ATACCCCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCT 23026 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | ||||| || ||||| || || | |||||| || ||| Sbjct 23025 GCAAGTGTCCTCCCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGA 22966 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | ||| ||| ||||| ||| |||| Sbjct 22965 GGAATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCA 22906 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || ||||||||||| ||||| || ||||| Sbjct 22905 ACCTCCAGGGTGATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCAT 22856 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || || || || ||||| | || | |||||| ||||| ||||| Sbjct 22338 ATGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 22279 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || | || ||||| |||||||| | ||||||||||| || Sbjct 22278 GCTAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 22219 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | || | ||| ||| ||||| || |||| Sbjct 22218 GGAATCCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCA 22159 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || ||||| ||||| ||||| || ||||| Sbjct 22158 ACCTCAAGAGTGATGGTCTTGCCAGTTAGTGTTTTGACAAAGATCTGCAT 22109 >seq31522 Length=43835 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | ||| | || |||||||||| || | ||||| ||||| || ||| Sbjct 29175 ATACCACCGCGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCG 29116 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | ||||| || || ||||| || ||||| ||||| ||| Sbjct 29115 GCTAGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGA 29056 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||| | || || ||||| | || | || ||| ||||| || ||| Sbjct 29055 GGAATTCCTTCTCTGTCCTGAATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCA 28996 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| || || || ||||| ||||| |||||||| Sbjct 28995 ACTTCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 28946 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||| || ||||| || || | ||||||||| ||||| |||||||||||||| || || Sbjct 35320 TGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGAGGAATTCCTTCTTTATCCTGAATC 35261 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | || ||| ||||| || ||||||||||| || || ||||| || Sbjct 35260 TTCGCCTTCACGTTCTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATCGTTTTCCCA 35201 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| |||||||| Sbjct 35200 GTCAGAGTTTTCACAAAGATTTGCAT 35175 >seq34423 Length=256361 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || || |||||||| || || || ||||| | || | || || || || Sbjct 118940 ATTTGCATGCCTCCTCTCAAACGGAGCACGAGATGGAGGGTGGATTCCTTCTGGATGTTG 118999 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || | || || | ||||||||||| || || | ||||| || Sbjct 119000 TAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGG 119059 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || |||| || | || ||| || |||||| Sbjct 119060 TCCGGGGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCAATGGTGTCGGAA 119119 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || || || || || || || ||||| ||||| || || || ||||| Sbjct 119120 CTCTCCACCTCGAGGGTGATGGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 119175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898783984368000