Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq33784 104 3e-17 seq31522 102 1e-16 seq33714 86.0 9e-12 >seq33784 Length=161669 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || || || || || || || |||||||| || || Sbjct 104656 ATGCAGATCTTTGTCAAGACCTTAACAGGGAAGACCATCACTTTAGAAGTAGAGAGCTCA 104715 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| ||| || || ||||| ||||| || |||||||| ||| Sbjct 104716 GATACTATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCAA 104775 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGA 155977 |||||| |||| | ||| ||||||||||| || || Sbjct 104776 CAAAGACTGATCTTTGCTGGTAAGCAGCTTGATGA 104810 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || || || | || || || |||| Sbjct 104884 ATGCAAATCTTTGTCAAGACCTTGACTGGGAAGACCATCACTCTTGAGGTAGAGAGTTCT 104943 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || |||||| ||| || || || || |||||||| || ||||| || Sbjct 104944 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 105003 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || |||||| ||| || ||||||||||| ||| Sbjct 105004 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGAT 105039 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || || ||||| || || || ||||| ||||| || || Sbjct 105201 ATGCAGATCTTTGTCAAGACCTTAACTGGGAAGACCATCACATTGGAAGTGGAGAGCTCA 105260 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || || || |||||||| |||||||| || Sbjct 105261 GATACAATTGACAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCAG 105320 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || ||||||||||| ||| || || | |||| || || Sbjct 105321 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGATGATGGGAGGACACTTGCAGACTACAAC 105380 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || ||||||||| Sbjct 105381 AT-TCAAAAGGAGTCAACACTCCATTTAGTG 105410 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| || || || || | || || || |||| Sbjct 105429 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACTCTTGAGGTGGAGAGTTCT 105488 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || ||| || || || || || |||||||| || ||||| || Sbjct 105489 GATACTATTGATAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 105548 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||||| ||| || ||||||||||| ||| || || | |||| || || Sbjct 105549 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACACTTGCAGACTACAAC 105608 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || ||||| ||| Sbjct 105609 AT-TCAAAAGGAGTCAACACTCCATTTGGTG 105638 >seq31522 Length=43835 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| ||||||| ||||| || || ||||||| ||| || Sbjct 35175 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAAACGATCACCCTAGAAGTTGAAAGCTCA 35234 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||||| || || || ||||||||||| || |||||||| ||| Sbjct 35235 GATACAATTGAGAACGTGAAGGCGAAGATTCAGGATAAAGAAGGAATTCCTCCAGATCAA 35294 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || | ||||| | ||| || || ||||| || ||| Sbjct 35295 CAGCGCTTGATATTTGCAGGGAAACAGCTTGAGGAT 35330 >seq33714 Length=161502 Score = 86.0 bits (94), Expect = 9e-12 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | ||||| || || || ||| | || || || || Sbjct 21881 ATGCAGATCTTTGTAAAAACTCTAACTGGCAAGACCATCACACTTGAGGTTGAGAGCTCA 21940 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||| || |||||||||||||| || ||||| || ||| Sbjct 21941 GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGACCAA 22000 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| ||| || |||||||| |||||| | | ||| | |||| || | Sbjct 22001 CAGAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACA-- 22058 Query 156003 ATATCCAAA 156011 | ||||||| Sbjct 22059 ACATCCAAA 22067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731163913840000