Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq33784 123 5e-23 seq33714 122 2e-22 seq33279 109 1e-18 seq31522 98.7 2e-15 seq33274 84.2 4e-11 >seq33784 Length=161669 Score = 123 bits (136), Expect = 5e-23 Identities = 142/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 |||| || || |||||||||| | || || | ||||| | || ||||||||||||| Sbjct 104844 CTTTTGA-ATGTTATAATCAGCAAGGGTACGCCCGTCATCAAGCTGCTTACCAGCAAAGA 104786 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | | ||| |||||||| || || || ||||| ||||| || || ||| ||| ||||| Sbjct 104785 TCAGTCTTTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTAGCTTTCACATTGT 104726 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 |||| |||||| |||||||||| ||| ||||| || || ||||| || || | || Sbjct 104725 CAATAGTATCTGAGCTCTCTACTTCTAAAGTGATGGTCTTCCCTGTTAAGGTCTTGACAA 104666 Query 192527 ATATCTGCAT 192536 | |||||||| Sbjct 104665 AGATCTGCAT 104656 >seq33714 Length=161502 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | ||| | || | |||||| |||||| || || Sbjct 21882 ATACCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 21823 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || ||| |||| || | || || |||||||| || | |||||||||||| || Sbjct 21822 GCAAGAGTGCGTCCATCGTCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 21763 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| |||||||| || ||| |||||||| || | |||||| || Sbjct 21762 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 21703 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||||| ||||| | ||| |||||||| Sbjct 21702 ACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21653 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| | || | ||| | || | |||||| |||||| || || Sbjct 22338 ATGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 22279 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || |||||||| || | ||||||||||| || Sbjct 22278 GCTAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 22219 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| || ||||| || | |||||| || Sbjct 22218 GGAATCCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCA 22159 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||||| |||||| | ||| |||||||| Sbjct 22158 ACCTCAAGAGTGATGGTCTTGCCAGTTAGTGTTTTGACAAAGATCTGCAT 22109 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||| | || | || | |||| ||| || ||| || || || Sbjct 22110 ATACCACCACGCAGACGAAGAACAAGGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCT 22051 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || |||||||| || | |||||||| ||||| Sbjct 22050 GCAAGAGTGCGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGGTCAGGA 21991 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| || ||| |||||||| || | |||||| || Sbjct 21990 GGAATTCCTTCTTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 21931 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||||| ||||| | ||| |||||||| Sbjct 21930 ACCTCAAGTGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21881 >seq33279 Length=59633 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | || | |||||| ||| |||||||||| Sbjct 11774 ACCACCACGGAGACGGAGAACAAGGTGCAGGGTGGACTCTTTCTGGATGTTATAATCAGC 11833 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || | | |||| ||||| || || ||||||||||| | ||||| ||||| ||||| Sbjct 11834 CAGAGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCTGGTGG 11893 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || ||||| || || ||| ||||| |||| || || ||| || Sbjct 11894 GATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATAGTGTCAGAGCTTTCCAC 11953 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | ||||||||| || ||||| | || || | |||||||||||| Sbjct 11954 CTCCAAAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAATATCTGCAT 12001 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || | | || ||||| | |||| ||| || || || |||||| Sbjct 12000 ATACCACCCCTCAGCCTGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAATCA 12059 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||| || || ||||| ||||| | ||||| ||||| || Sbjct 12060 GCAAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGATCTGGG 12119 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || ||||| || || ||| || | || || ||| Sbjct 12120 GGAATTCCTTCTTTGTCCTGGATTTTTGCCTTCACGTTATCAATTGTGTCGGAGCTTTCC 12179 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || || || | || || | ||| |||||||| Sbjct 12180 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 12229 >seq31522 Length=43835 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || | ||| | ||| | || || |||| | ||||| | Sbjct 35401 CCACCACGAAGACGGAGAACAAGATGGAGAGTTGATTCCTTCTGGATACTGTAATCGGCA 35342 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || || |||| || | ||||| || ||||| || || | ||||||||| || || Sbjct 35341 AGAGTGCGCCCATCCTCAAGCTGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGAGGA 35282 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||||||||| || || || || || || || | |||||| ||| ||| Sbjct 35281 ATTCCTTCTTTATCCTGAATCTTCGCCTTCACGTTCTCAATTGTATCTGAGCTTTCAACT 35222 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || ||||| ||||| | ||||| | ||| || ||||| Sbjct 35221 TCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 35175 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 192347 CTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGA 192406 ||| ||| || || ||||| | | || || |||| || | ||||| || ||||| | Sbjct 29362 CTTAAGA-ATGTTGTAATCGGCAAGAGTGCGCCCATCCTCAAGCTGTTTCCCTGCAAATA 29304 Query 192407 TTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAG 192466 | || |||||||| || || || ||||| || ||||| ||||| || |||||| Sbjct 29303 TCAAGGGCTGTTGATTTGGAGGAATGCCTTCCTTGTCTTGGATTTTCGCCTTGACATTAT 29244 Query 192467 TTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAA 192526 || | ||| || || || || |||||||| || || ||||||||||| || | | Sbjct 29243 CAATTGTATCGGAGCTCTCAACCTCCAGAGTAATTGTCTTCCCAGTTAATGTCTTCACGA 29184 Query 192527 ATATCTGCAT 192536 |||||||||| Sbjct 29183 ATATCTGCAT 29174 >seq33274 Length=135285 Score = 84.2 bits (92), Expect = 4e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | |||| |||||| ||| |||||||||| Sbjct 48240 ACCACCACGGAGACGGAGAACAAGGTGCAGGGTAGACTCTTTCTGGATGTTATAATCAGC 48299 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || | | |||| ||||| ||||||||||||||||| | ||||| ||||| ||||| Sbjct 48300 CAGAGTCCTTCCATCTTCCAACTGTTTACCAGCAAAGATCAGCCTCTGCTGATCTGGTGG 48359 Query 192429 TATTCCTTCTTTATCTTGTATTTT 192452 || || || || || || || || Sbjct 48360 GATGCCCTCCTTGTCCTGAATCTT 48383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983503703490000