Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq33714 113 8e-20 seq33784 109 1e-18 seq31522 89.7 9e-13 seq33279 86.0 1e-11 >seq33714 Length=161502 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | ||| | || | |||||| ||||| || ||| Sbjct 21882 ATACCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 21823 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || ||| | || || | || || ||||||||||| | ||||||||| || || Sbjct 21822 GCAAGAGTGCGTCCATCGTCAAGCTGCTTTCCAGCAAAAATCAGTCTCTGTTGATCTGGA 21763 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| || ||| |||||||| || |||||||| || Sbjct 21762 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCA 21703 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||||| ||||| | || |||||||| Sbjct 21702 ACCTCAAGGGTGATGGTCTTGCCAGTTAGAGTTTTTACAAAGATCTGCAT 21653 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | |||||||||||||| || ||||||||||||||||| || Sbjct 22026 TGCTTTCCAGCAAAAATAAGCCTCTGTTGGTCAGGAGGAATTCCTTCTTTATCTTGAATC 21967 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| |||||||| || |||||||| || || || || || ||||| || ||| Sbjct 21966 TTAGCCTTTACATTGTCAATGGTATCTGAGCTCTCAACCTCAAGTGTGATGGTCTTGCCA 21907 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||||| | || |||||||| Sbjct 21906 GTTAGAGTTTTTACAAAGATCTGCAT 21881 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || | ||| | || | |||||| ||||| || ||| Sbjct 22338 ATGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCT 22279 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || || | || || | || || ||||||||||| | |||||||| || || Sbjct 22278 GCTAGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 22219 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || ||| || ||||| || |||||||| || Sbjct 22218 GGAATCCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCA 22159 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| ||||| || ||||||| |||||| | || |||||||| Sbjct 22158 ACCTCAAGAGTGATGGTCTTGCCAGTTAGTGTTTTGACAAAGATCTGCAT 22109 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | || ||||| || || || |||||||| |||||||| || Sbjct 22773 TGCTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGAGGAATTCCTTCCTTATCTTGAATC 22714 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 ||| || ||||| || ||||| || || ||||| ||||| ||||| || ||| Sbjct 22713 TTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACTTCAAGAGTGATGGTCTTGCCA 22654 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || |||||||| Sbjct 22653 GTAAGAGTTTTCACAAAGATCTGCAT 22628 >seq33784 Length=161669 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| |||||||| | | | || ||||||| | || ||||||||||| || | ||| Sbjct 104838 AATGTTATAATCAGCAAGGGTACGCCCGTCATCAAGCTGCTTACCAGCAAAGATCAGTCT 104779 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || || || || ||||| ||||| || || ||| ||| ||||| ||||| Sbjct 104778 TTGTTGATCTGGAGGAATACCTTCCTTATCCTGAATCTTAGCTTTCACATTGTCAATAGT 104719 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 |||||| |||||||||| ||| ||||| || || ||||| || || | || ||||| Sbjct 104718 ATCTGAGCTCTCTACTTCTAAAGTGATGGTCTTCCCTGTTAAGGTCTTGACAAAGATCTG 104659 Query 172067 CAT 172069 ||| Sbjct 104658 CAT 104656 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || || ||||| | |||||||| | || | ||| || ||| || || ||| Sbjct 105430 ATCCCTCCCCTCAGTCGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCT 105371 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | | | ||||| | || || ||||||||||| | || ||| ||||| || Sbjct 105370 GCAAGTGTCCTCCCATCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGA 105311 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || || ||| ||||| || |||||||| || Sbjct 105310 GGAATGCCTTCCTTGTCCTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTCTCC 105251 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | || ||||| || |||||||| || || | || |||||||| Sbjct 105250 ACTTCCAATGTGATGGTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCAT 105201 >seq31522 Length=43835 Score = 89.7 bits (98), Expect = 9e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | ||| | || ||| ||| || ||||| | | || || | || || | || Sbjct 29377 ATGGAGAGTGGATTCCTTAAGAATGTTGTAATCGGCAAGAGTGCGCCCATCCTCAAGCTG 29318 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 ||| || ||||| || || |||||| | || || || ||||| || ||||| ||||| Sbjct 29317 TTTCCCTGCAAATATCAAGGGCTGTTGATTTGGAGGAATGCCTTCCTTGTCTTGGATTTT 29258 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 || |||||| || ||||| || || || || |||||||| || || ||||| Sbjct 29257 CGCCTTGACATTATCAATTGTATCGGAGCTCTCAACCTCCAGAGTAATTGTCTTCCCAGT 29198 Query 172046 TAATGTTTTAATGAATATCTGCAT 172069 |||||| || | |||||||||||| Sbjct 29197 TAATGTCTTCACGAATATCTGCAT 29174 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| || ||||| || || | |||||| || || || |||||||||||||| || || Sbjct 35320 TGTTTCCCTGCAAATATCAAGCGCTGTTGATCTGGAGGAATTCCTTCTTTATCCTGAATC 35261 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || || || || |||||||| ||| |||||||| || || ||||| ||| Sbjct 35260 TTCGCCTTCACGTTCTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATCGTTTTCCCA 35201 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | ||||| | || || ||||| Sbjct 35200 GTCAGAGTTTTCACAAAGATTTGCAT 35175 >seq33279 Length=59633 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| | | || | | | || ||||| || || |||||||| || | ||| Sbjct 11820 ATGTTATAATCAGCCAGAGTCCTTCCATCTTCCAACTGCTTTCCAGCAAAGATCAGCCTC 11879 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || ||||| || || || || ||||| || || ||| ||||| ||||| Sbjct 11880 TGCTGATCTGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATAGTG 11939 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| || || | ||||||||| || ||||| | || || | ||||||||| Sbjct 11940 TCAGAGCTTTCCACCTCCAAAGTAATGGTCTTTCCAGTCAGGGTCTTCACAAATATCTGC 11999 Query 172068 AT 172069 || Sbjct 12000 AT 12001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904260280920000