Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq34317 150 2e-31 seq34118 127 2e-24 seq33222 113 5e-20 >seq34317 Length=297777 Score = 150 bits (166), Expect = 2e-31 Identities = 150/193 (78%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 158281 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC 158340 || |||||| || || |||| |||||||||||||| ||| ||||||||||| ||||| Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 158341 CTTGCACTTCTTCCTTGCTGCATGGCCTGT-----TGTCGGCATCTGGTTCACCGCCCTT 158395 || ||||||||| | | ||| |||||||| || || |||||||||| ||| | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTA 200343 Query 158396 GGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGAT 158455 || || || |||||||||||||| ||||||||||| |||||||| ||| | ||||| Sbjct 200344 GGTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 Query 158456 GGTCAGGGTCGTG 158468 |||| ||||||| Sbjct 200404 AGTCAAGGTCGTG 200416 >seq34118 Length=323312 Score = 127 bits (140), Expect = 2e-24 Identities = 217/315 (69%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 159706 TTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGT 159765 ||||||| || ||| | || || || | |||||||| ||||||| || || || Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 159766 CCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGA 159825 ||||| || ||| | || ||| ||| | | | || ||||||| ||||| || |||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 159826 CGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTG 159885 | || | || || |||||||||||||||| ||| || | || || | || | | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 159886 CCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCT 159945 | || ||||| | ||| ||||| || || | | |||||| || || |||||||| | Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 159946 TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCT 160005 | || ||| | |||||||| || || ||||| || ||| | ||||| |||| || Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 160006 TCTGGTCGCAGATCT 160020 | ||||| || |||| Sbjct 6770 TTTGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 159768 TTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACG 159827 ||||| || ||||| || ||| ||||| | | || ||||||| ||||| || ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 159828 TTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCC 159887 || || || || ||||||||||||||||| ||| || | |||| | | || | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 159888 ATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTT 159947 || ||||| | |||| |||| || || | | ||||||||| || |||||||| || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 159948 AAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCAC 159994 || ||| | |||||||| || || ||||| || ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547843847768000