Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq34118 181 1e-40 seq33222 154 2e-32 seq34317 141 1e-28 seq33933 93.3 5e-14 >seq34118 Length=323312 Score = 181 bits (200), Expect = 1e-40 Identities = 228/313 (73%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 152771 TTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCAT 152830 |||||||| || || | || || || || ||||| || ||||||| || || || Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 152831 CTTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGA 152890 ||| || || ||| | || || |||| | | ||||| ||||||| || || || |||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 152891 CATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTG 152950 ||||| | || |||||||||||||| |||| ||| | ||||| |||||||| | | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 152951 CCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTT 153010 | |||||||||| ||| ||||| |||||||| | | |||| ||||| ||||| || | Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 153011 TCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTT 153070 || ||||| | |||||| ||||| || ||||| ||| |||||||||||| | Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 153071 TCTGGTCCCAGAT 153083 | |||||||| || Sbjct 6770 TTTGGTCCCAAAT 6758 >seq33222 Length=111615 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 152832 TTTCGGGGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGAC 152891 ||| || || ||||| || || |||||| | |||| ||||||| || || || ||||| Sbjct 60572 TTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGAC 60513 Query 152892 ATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGC 152951 |||||| || |||||||||||||| ||||| ||| | ||||| | ||||||| | | Sbjct 60512 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCAC 60453 Query 152952 CATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTT 153011 |||||||||| ||| |||| |||||||| | | |||||||||| ||||| || || Sbjct 60452 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 60393 Query 153012 CAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTAC 153059 | ||||| || |||||| ||||| || ||||| |||||||| Sbjct 60392 CCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 141 bits (156), Expect = 1e-28 Identities = 143/185 (77%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 151543 ACACGGTTACTTTGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCT 151602 ||| ||||| ||||||| | ||||||||||| ||| |||||||| || |||||| | Sbjct 200228 ACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTT 200287 Query 151603 GCACTTCTTCCTCGCAGCATGGCCTGT-----TGTCGGTATCTGGTTCACTGCACTTGGT 151657 ||||||||| | | || |||||||| || |||||||||||||| || | ||| Sbjct 200288 ACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGT 200346 Query 151658 GTCAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATGGATGGT 151717 |||||| |||||||||||||| ||||||||||| |||||||| ||| | | ||| || Sbjct 200347 ATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGT 200406 Query 151718 CAGGG 151722 || || Sbjct 200407 CAAGG 200411 >seq33933 Length=146745 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 150995 GGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCT 151054 || |||||| | ||||| ||||| || ||||||||||||||| |||| ||||| ||| Sbjct 32859 GGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGCAGCT 32918 Query 151055 ATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 || ||| | ||||| || || || |||||||| || || | ||||||||| Sbjct 32919 ATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGG 32969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549090640328000