Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq34317 116 4e-21 seq34118 84.2 3e-11 >seq34317 Length=297777 Score = 116 bits (128), Expect = 4e-21 Identities = 132/176 (75%), Gaps = 6/176 (3%) Strand=Plus/Plus Query 72940 CATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTA 72999 ||||| || || ||| ||| |||||||| ||||| ||||||||||||||||| ||| Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 73000 CACTTCTTCCTCGCTGTATTCCCTGTA-----GTCTGTGTATGGTTAACCTCAATGGGTA 73054 ||||||||| | | || | |||||| || || | ||||| | | | | |||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 73055 TCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 73110 || | | |||||||||||||| ||||| ||||| ||||||||||| || || ||| Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 >seq34118 Length=323312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/205 (70%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 73796 ATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGTGTCGCAGCAATC 73855 || ||||| |||| ||| | |||||||||| || ||| || ||||| ||| | || Sbjct 7050 ATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAACTATA 6991 Query 73856 TTTCGTTATAT----TTTATTCATACAGGGTTTCCACAATATAACTCTTAATCCATTTCA 73911 ||||| | || ||| |||| |||||||| | ||| || | | |||||||| Sbjct 6990 TTTCGATCCATCCTCTTTTTTCA---AGGGTTTC-ATAATTGGACATTGTACCCATTTCA 6935 Query 73912 TATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACATGGTGCAAC 73971 ||||||||| || | ||| || | || || || ||||| || || |||||||| || Sbjct 6934 TATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCTAC 6875 Query 73972 AGTACAGAACACATTGTATGAAGAC 73996 ||| | || || || | ||||||| Sbjct 6874 CGTAGAAAATACTTTATTTGAAGAC 6850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572319344792000