Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq33599 156 5e-32 seq33488 143 3e-28 seq34325 91.5 2e-12 seq34118 86.0 8e-11 >seq33599 Length=161954 Score = 156 bits (172), Expect = 5e-32 Identities = 128/156 (82%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| |||||||||||||||||||| || ||||| || | | |||| || | ||| Sbjct 157463 GAGTGGATATTCTCGATGGCGATCTGGAATCCATAAAACGCACGCGCCTCCGCAATCTGG 157404 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||||||||| ||||| || ||||| |||||||||||| |||||| ||| Sbjct 157403 ACCTCCTTCATGAACCGTCCGGCAAGATTCTCCAAAACGATGCCGTCGGAGGCGGCAAAA 157344 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCG 869788 || || || |||||||| |||||||| ||||||| Sbjct 157343 AAGGCAAGTACGTGCTTAATAAAGTGCTTCTCGTCG 157308 >seq33488 Length=63435 Score = 143 bits (158), Expect = 3e-28 Identities = 197/277 (71%), Gaps = 14/277 (5%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| || || | |||| | || ||| Sbjct 35450 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAACGCACGAGCCTCGGAGACCTGG 35509 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||||| |||||||| || |||||||| |||||| || Sbjct 35510 ACCTCTTTCAT-------------AGGTTCTCTAAAACAATGCCGTCAGAGGCGGCAAAG 35556 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || |||||||| || ||||| ||||||| |||| | ||||||| | Sbjct 35557 AAAGCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCCCAGTGATTG 35616 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||| ||| ||||| || || || ||||||| ||||||||||| || |||||| Sbjct 35617 AGGTCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCTTTCTTGTAC 35676 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGA 869909 |||||||| | | |||| |||| ||| |||||| Sbjct 35677 ATCTCCCAAATCTCAGGGTATTGGATTGGG-AGAGGA 35712 >seq34325 Length=393795 Score = 91.5 bits (100), Expect = 2e-12 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| | | | || ||||||||||||||||||||| || | | ||| ||| Sbjct 203941 GCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGATCTCACGGGAGGTGATGGTG 203882 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGG-TCGATCATGTC 1254466 |||||| || | || ||||| ||||| || | || |||| || || Sbjct 203881 GGCTTCTTGTTGTAGCGGGCAAGACGAGAAGCCTCC-TGAGCAAGCTTCTCGAAAATATC 203823 Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 ||||| || |||||||| ||| | |||| | ||||| || | |||||| ||||| Sbjct 203822 GTTGATGAAACTGTTCATGATTCCCATGGCCTTGCTAGAGATTCCGATGTCGGGATGCAC 203763 Query 1254527 CTGCTTGAGCACCTTGTAGATG 1254548 |||||| ||||||||| ||||| Sbjct 203762 CTGCTTCAGCACCTTGAAGATG 203741 Score = 87.8 bits (96), Expect = 2e-11 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 |||| ||| ||| | | | || ||||||||||||||||||||| || | | ||| || Sbjct 201820 GCCAATTCTCCGGGAAGAACCAAGCGCACGGCGGTCTGGATCTCACGGGAGGTGATAGTA 201761 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGG-TCGATCATGTC 1254466 |||||| || | || ||||| ||||| || | || |||| || || Sbjct 201760 GGCTTCTTGTTGTAGCGAGCAAGACGAGAAGCCTCC-TGAGCAAGCTTCTCGAAAATATC 201702 Query 1254467 GTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCAC 1254526 ||||| || |||||| | | ||| | |||| | ||||| || | |||||| ||||| Sbjct 201701 GTTGATGAAACTGTTCATAATCCCCATGGCCTTGCTAGAGATTCCGATGTCGGGATGCAC 201642 Query 1254527 CTGCTTGAGCACCTTGTAGATG 1254548 |||||| ||||||||| ||||| Sbjct 201641 CTGCTTCAGCACCTTGAAGATG 201620 >seq34118 Length=323312 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||| |||||| |||||||| |||| |||||| || | |||| || | Sbjct 35052 GCTGCCAATTACCTCAACATCAAGAGCTTGCTGGATCTTACCTGTCAAACTGTTGCTGAT 35111 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| ||| |||| |||||||||||||| || || |||||||| Sbjct 35112 ATGATCAAGGGGAAGACGCCAGAGGAGATCCGCAAAACATTCAACATCAA 35161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6100787393535800