Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq34240 95.1 1e-14 seq33784 95.1 1e-14 seq31522 93.3 3e-14 seq33714 89.7 4e-13 seq34050 86.0 5e-12 >seq34240 Length=378565 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 110360 ATTGCC--GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAAC 110417 |||||| ||||||||||| | ||| ||||| || ||||| |||| ||| || |||| Sbjct 153685 ATTGCCAGGACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAAC 153626 Query 110418 AGCTGGAGGATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACA 110477 || |||| |||| || || |||| ||||||||||| || || ||||| || | ||| Sbjct 153625 AGTTGGAAGATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACC 153566 Query 110478 TGGTGTTAAGACTGCGAGGGGGAA 110501 |||| || ||||| | || |||| Sbjct 153565 TGGTTTTGAGACTTAGGGGAGGAA 153542 >seq33784 Length=161669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| || || || || || ||||| || | || |||| | Sbjct 105429 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACTCTTGAGGTGGAGAGTTCT 105488 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| |||||| ||||| |||||| | ||| ||||| Sbjct 105489 GATACTATTGATAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 105548 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || |||| |||| ||| || || ||||| ||||||| || ||| | || || |||||| Sbjct 105549 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACACTTGCAGACTACAAC 105608 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| || || || | || ||||| Sbjct 105609 ATTCAAAAGGAGTCAACACTCCATTTGGTG 105638 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || |||||||| || ||||| || || ||||| || | ||| ||| || | Sbjct 104656 ATGCAGATCTTTGTCAAGACCTTAACAGGGAAGACCATCACTTTAGAAGTAGAGAGCTCA 104715 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | | || ||| |||||| || || ||||| | || ||||| Sbjct 104716 -GATACTATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCA 104774 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||| || | ||| ||||| ||||| || || | | || | || ||||| || Sbjct 104775 ACAAAGACTGATCTTTGCTGGTAAGCAGCTTGATGACGGGCGTACCCTTGCTGATTATAA 104834 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||| ||||| || Sbjct 104835 CATTCAAAAGGAATCAAC 104852 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || |||||||| || ||||| || || ||||| || | ||| |||| || | Sbjct 105201 ATGCAGATCTTTGTCAAGACCTTAACTGGGAAGACCATCACATTGGAAGTGGAGAGCTCA 105260 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || ||| |||||| ||||| |||||| | || || || Sbjct 105261 -GATACAATTGACAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCA 105319 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || |||| |||| ||| || || ||||| || |||| || ||| | || || ||||| Sbjct 105320 GCAGCGACTGATTTTTGCTGGCAAGCAGCTCGATGATGGGAGGACACTTGCAGACTACAA 105379 Query 110452 CATTCAAAAAGAATCTAC 110469 ||||||||| || || || Sbjct 105380 CATTCAAAAGGAGTCAAC 105397 >seq31522 Length=43835 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| |||||| | || || ||||| || ||| | ||| || || | Sbjct 28946 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAAACGATCACCCTAGAAGTTGAAAGCTCA 29005 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | || || ||| ||| |||| |||||| | || ||||| Sbjct 29006 -GATACAATTGATAACGTGAAGGCGAAAATTCAGGACAGAGAAGGAATTCCTCCAGATCA 29064 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | |||| |||||||||||||| ||||||| | |||| | || |||||||| Sbjct 29065 GCAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAA 29124 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || |||||||| ||| |||| |||| | || |||| || || Sbjct 29125 TATCCAGAAAGAATCGACGCTGCATCTGGTTCTGAGGTTGCGCGGTGG 29172 >seq33714 Length=161502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||||||||| |||| || || ||||| ||| | || ||| | Sbjct 22856 ATGCAGATCTTTGTCAAAACGCTAACTGGGAAGACCATCACCCTGGAGGTTGAGAGTTCA 22915 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||| ||||| |||||| | || || ||| Sbjct 22916 GATACCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCAA 22975 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | ||| |||||||||||||| |||| || ||| | || || |||||| Sbjct 22976 CAGCGTTTGATCTTTGCAGGTAAACAGCTGGATGATGGGAGGACACTTGCAGACTACAAC 23035 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || || |||||| | || ||||| | || || | ||||| Sbjct 23036 ATTCAGAAGGAGTCTACGCTCCATTTGGTGCTGCGATTGAGGGGGGG 23082 >seq34050 Length=239353 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | ||||| |||||||| ||| | || ||| Sbjct 44335 AATGCAGATTTTCGTGAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTGGAAAGCTC 44276 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||||| | | | | || || |||||| ||||| |||||| | || || || Sbjct 44275 CGATACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 44216 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || || | ||| || || ||||| ||||||| | | || | || || ||||| Sbjct 44215 ACAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTTGCCGACTACAA 44156 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||||| || || || || | ||| ||||| | || || | || |||| Sbjct 44155 CATTCAGAAGGAGTCCACCCTTCACTTGGTGCTCAGGCTCAGGGGTGGAA 44106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412452161358200