Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq33599 123 4e-22 seq34325 120 5e-21 seq31010 111 2e-18 seq34419 98.7 2e-14 seq33488 86.0 1e-10 >seq33599 Length=161954 Score = 123 bits (136), Expect = 4e-22 Identities = 218/317 (69%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| || || ||| | | || ||||| | |||||||| || ||| Sbjct 157734 TCGCGA--GATCAACTCATTCGAGAAGGACAACCCCGGCATCAAACCGCGCTTTTTCAGC 157677 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 || || || ||||| ||||| || ||||| ||||| ||||| || || ||| | | Sbjct 157676 CAGAATATAGCACAAAAACTCCCAGAGAAGAAGATCCCCTCAACACAAGCGAAGGCCAAC 157617 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | ||||| || || | ||| ||| || ||||| | ||||||| ||| Sbjct 157616 AAACGCTCAGCGAATGATTCCGAGCCATCA------ATCCAACGGAGAGCCCACTTAGCC 157563 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || ||| ||| ||||||| || || || ||| | || | |||||||| | | Sbjct 157562 TTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTATCCTTCTCTTCAGAA 157503 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| ||| || || | || || ||| |||| |||||||| || ||||||||| Sbjct 157502 TCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCTCAGAGTGGATATTCTCGATGGCG 157443 Query 794647 ATCTGGAAGCCATAAAA 794663 |||||||| |||||||| Sbjct 157442 ATCTGGAATCCATAAAA 157426 Score = 102 bits (112), Expect = 1e-15 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 796162 TGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCGTCGCTGGCGGCG 796221 ||||||||||||||||| || ||||| || ||||| |||||||||||| |||||| Sbjct 157406 TGGACCTCCTTCATGAACCGTCCGGCAAGATTCTCCAAAACGATGCCGTCGGAGGCGGCA 157347 Query 796222 AAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||| || |||||||| |||||||| ||||||| Sbjct 157346 AAAAAGGCAAGTACGTGCTTAATAAAGTGCTTCTCGTCG 157308 >seq34325 Length=393795 Score = 120 bits (132), Expect = 5e-21 Identities = 169/235 (72%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| ||||| || || || ||||||||||| | |||| ||| ||| | | | | Sbjct 203980 TTGGTGACAGCCTTAGTGCCTTCGGAGACGGCGTGTTTCGCCAATTCTCCGGGAAGAACC 203921 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 | ||||||||||||||||||||| |||| | ||| ||| |||||| ||| || Sbjct 203920 AAGCGCACGGCGGTCTGGATCTCACGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCA 203861 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || || ||||| || | || |||| || ||||||| || ||||||||| Sbjct 203860 AGACGAGAAGCCTC-CTGAGCAAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATGAT 203802 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| | ||||| || | |||||| ||||||||||| ||||||||| Sbjct 203801 TCCCATGGCCTTGCTAGAGATTCCGATGTCGGGATGCACCTGCTTCAGCACCTTG 203747 Score = 111 bits (122), Expect = 2e-18 Identities = 167/235 (71%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| || ||||| || || || ||||||||||| | |||| ||| ||| | | | | Sbjct 201859 TTGGTTACAGCCTTAGTTCCTTCAGAGACGGCGTGTTTAGCCAATTCTCCGGGAAGAACC 201800 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 | ||||||||||||||||||||| |||| | ||| || |||||| ||| || Sbjct 201799 AAGCGCACGGCGGTCTGGATCTCACGGGAGGTGATAGTAGGCTTCTTGTTGTAGCGAGCA 201740 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGC-GGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 || || ||||| || | || |||| || ||||||| || |||||| || Sbjct 201739 AGACGAGAAGCCTC-CTGAGCAAGCTTCTCGAAAATATCGTTGATGAAACTGTTCATAAT 201681 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 | ||| | ||| | ||||| || | |||||| ||||||||||| ||||||||| Sbjct 201680 CCCCATGGCCTTGCTAGAGATTCCGATGTCGGGATGCACCTGCTTCAGCACCTTG 201626 >seq31010 Length=16654 Score = 111 bits (122), Expect = 2e-18 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 ||||||| || ||||| || ||||| |||||||||||| | |||||||| ||| | | | Sbjct 16007 ACTTGGTCACCGCCTTAGTCCCCTCAGAGACGGCGTGCTTAGCCAGTTCACCGGGGAGCA 16066 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 || | ||| || ||||||||||| |||| | |||||| |||||| ||||| Sbjct 16067 CAAGCCTCACCGCCGTCTGGATCTCCCGGGAGGTGATCGTCGGCTTCTTGTTGTAGCGCG 16126 Query 1485593 CCAGGCGGCCGGCCTC--GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCAT 1485650 | || || ||||| || | | | | |||| || || |||| ||| |||||| Sbjct 16127 CGAGCCGCGAAGCCTCCTGGGCCAGCTTC--TCGAAGATATCATTGATAAAGCTGTTCAT 16184 Query 1485651 GATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||| ||| | ||| ||||||| || | || ||||| ||||| || || ||||| Sbjct 16185 GATCCCCATGGCCTTGCTGGAGATCCCGATATCAGGGTGAACCTGTTTCAGAACCTT 16241 >seq34419 Length=564869 Score = 98.7 bits (108), Expect = 2e-14 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| || ||||| || || |||||||||||| | |||| ||| ||| | | | | Sbjct 341382 TTGGTGACTGCTTTGGTGCCTTCAGAGACGGCGTGCTTTGCCAATTCACCGGGAAGAACC 341323 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 | | || ||||||||||||||||||| ||| || |||||| ||| ||| Sbjct 341322 AATCTGACAGCGGTCTGGATCTCGCGGGAAGTGATTGTCGGCTTCTTGTTGTAGCGGGCC 341263 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 | ||| ||||| | ||| |||| || ||||||| || ||||||||| Sbjct 341262 AAGCGAGACGCCTCTTGGGCGAGCTTCTCGAAGATATCGTTGATGAAGCTGTTCATGATG 341203 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| ||||||| || | || || || || ||||| ||||||||| Sbjct 341202 CCCATGGCCTTGCTGGAGATCCCGATATCAGGATGGACTTGCTTCAGCACCTTG 341149 >seq33488 Length=63435 Score = 86.0 bits (94), Expect = 1e-10 Identities = 153/226 (68%), Gaps = 13/226 (6%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||||| || |||||||| ||||| |||||||| || |||||| Sbjct 35495 GCCTCGGAGACCTGGACCTCTTTCAT-------------AGGTTCTCTAAAACAATGCCG 35541 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||| || || || || |||||||| || ||||| ||||||| |||| Sbjct 35542 TCAGAGGCGGCAAAGAAAGCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGG 35601 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| ||| ||| || || || || || ||||| || |||||| Sbjct 35602 GTATCCCAGTGATTGAGGTCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCC 35661 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGA 796375 ||||| || |||||||||||||| ||| |||| |||| |||| Sbjct 35662 TCGGCTTTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGGGA 35707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7908013008978600