Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq33784 109 4e-19 seq33714 104 2e-17 seq34240 87.8 1e-12 seq34050 82.4 6e-11 >seq33784 Length=161669 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || || || || || ||||| || | || |||| | Sbjct 105429 ATGCAGATCTTTGTCAAGACCTTGACTGGGAAGACCATCACTCTTGAGGTGGAGAGTTCT 105488 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| ||||||| || || |||||| | ||| |||||| Sbjct 105489 GATACTATTGATAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 105548 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| |||| ||| || || ||||| ||||| | | ||| | || ||||||||| Sbjct 105549 CAGCGACTGATTTTTGCTGGCAAGCAGCTCGAGGATGGGAGGACACTTGCAGACTACAAC 105608 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||||||||||| || | || ||||| || Sbjct 105609 ATTCAAAAGGAGTCAACACTCCATTTGGTGCTG 105641 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || ||||| || || ||||| || | ||| |||| ||| Sbjct 105201 ATGCAGATCTTTGTCAAGACCTTAACTGGGAAGACCATCACATTGGAAGTGGAGAGCTCA 105260 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| ||||||| || || |||||| | || || || Sbjct 105261 -GATACAATTGACAATGTTAAAGCAAAGATTCAGGACAAGGAAGGCATTCCTCCAGACCA 105319 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| |||| |||| ||| || || ||||| || || | | ||| | || |||||||| Sbjct 105320 GCAGCGACTGATTTTTGCTGGCAAGCAGCTCGATGATGGGAGGACACTTGCAGACTACAA 105379 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||||||||||||||| || Sbjct 105380 CATTCAAAAGGAGTCAAC 105397 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || |||||||| || ||||| || | ||| ||| ||| Sbjct 104656 ATGCAGATCTTTGTCAAGACCTTAACAGGGAAGACCATCACTTTAGAAGTAGAGAGCTCA 104715 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| |||||| ||||| ||||| | || ||||| Sbjct 104716 -GATACTATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAAGGTATTCCTCCAGATCA 104774 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || ||||| || | ||| ||||| ||||| || |||| || | || || || || Sbjct 104775 ACAAAGACTGATCTTTGCTGGTAAGCAGCTTGATGACGGGCGTACCCTTGCTGATTATAA 104834 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||||||||| || || Sbjct 104835 CATTCAAAAGGAATCAAC 104852 >seq33714 Length=161502 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| |||| || || ||||| ||| | || ||| | Sbjct 22856 ATGCAGATCTTTGTCAAAACGCTAACTGGGAAGACCATCACCCTGGAGGTTGAGAGTTCA 22915 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| || || |||||| | || || || Sbjct 22916 GATACCATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAAGGCATTCCTCCAGACCAA 22975 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| |||||||||||||| || | | ||| | || ||||||||| Sbjct 22976 CAGCGTTTGATCTTTGCAGGTAAACAGCTGGATGATGGGAGGACACTTGCAGACTACAAC 23035 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| |||||||||||| | || ||||| || ||||| | ||||| Sbjct 23036 ATTCAGAAGGAGTCTACGCTCCATTTGGTGCTGCGATTGAGGGGGGG 23082 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| |||||| |||| ||||| ||||| || | || ||| ||| Sbjct 21881 ATGCAGATCTTTGTAAAAACTCTAACTGGCAAGACCATCACACTTGAGGTTGAGAGCTCA 21940 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | ||||| |||||| ||||||||||| | || || || Sbjct 21941 -GATACCATTGACAATGTAAAGGCTAAGATTCAAGATAAAGAAGGAATTCCTCCTGACCA 21999 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||||| ||| || || ||||| || || | | || | || |||||||| Sbjct 22000 ACAGAGGCTTATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGCACTCTTGCAGACTACAA 22059 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| |||||||||||||| Sbjct 22060 CATCCAAAAGGAGTCTAC 22077 >seq34240 Length=378565 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 107643 ATTGCC--GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAAC 107700 |||||| || |||||||| | ||| |||||||||||||| |||| ||| || |||| Sbjct 153685 ATTGCCAGGACAAAGAAGGTATCCCCCCTGATCAGCAGAGACTGATTTTTGCTGGCAAAC 153626 Query 107701 AGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACA 107760 || |||| || | | || |||| || |||||||| || ||||| || || | ||| Sbjct 153625 AGTTGGAAGATGGAAGGACTCTGGCTGATTACAACATCCAGAAGGAATCAACACTTCACC 153566 Query 107761 TGGTGTTGAGATTGCGAGGGGGAAATA 107787 |||| |||||| | | || |||| || Sbjct 153565 TGGTTTTGAGACTTAGGGGAGGAACTA 153539 >seq34050 Length=239353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 |||||| ||||| || || ||| | || || |||||||| ||| | || ||| ||| Sbjct 44335 AATGCAGATTTTCGTGAAGACTCTCACCGGGAAAACCATCACCCTGGAGGTGGAAAGCTC 44276 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||||| | | | | || || ||||| || || |||||| | || || | Sbjct 44275 -CGATACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGCATCCCTCCTGACC 44217 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 | ||||| || || | ||| || || ||||| ||||| | | || | || ||||||| Sbjct 44216 AACAGAGGCTCATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTTGCCGACTACA 44157 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||||| |||||||| || | ||| ||||| Sbjct 44156 ACATTCAGAAGGAGTCCACCCTTCACTTGGTG 44125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398500534528600