Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq34118 145 8e-30 seq33222 116 4e-21 seq34317 114 1e-20 seq33933 82.4 8e-11 >seq34118 Length=323312 Score = 145 bits (160), Expect = 8e-30 Identities = 221/315 (70%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 159187 TTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGT 159246 ||||||| || ||| | || || || || |||||||| ||||||| || || || Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 159247 CCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGA 159306 ||||| || || | ||||| | | | | ||||| | |||||||| || ||||||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 159307 CACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTG 159366 || | |||| || |||||||||||||||| ||| | | || || | |||| | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 159367 CTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCT 159426 |||||||||| | || || |||||||| |||| || || || || ||||| || | Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 159427 TTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCT 159486 | || ||| | |||||||| || || |||||||| ||| | ||||| |||| || Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 159487 TCTGGTCGCAGATCT 159501 | ||||| || |||| Sbjct 6770 TTTGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 159249 TTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACA 159308 ||||| || || || ||||| | ||| | |||| | |||||||| || ||||||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 159309 CTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCT 159368 | ||||| || ||||||||||||||||| ||| | | |||| | | |||| || Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 159369 ATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTT 159428 |||||||| | || | |||||||| |||| || ||||| || ||||| || || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 159429 AAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCAC 159475 || ||| | |||||||| || || |||||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 114 bits (126), Expect = 1e-20 Identities = 140/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Plus Query 157755 ACACGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCT 157814 ||| ||||| || |||| ||||||||||||| ||| ||||||||| | | Sbjct 200228 ACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTT 200287 Query 157815 TCACTTCTTCCTCGCCGCATGGCCTGTTGTCGGC-----ATCTGGTTCACTGCACTGGGC 157869 ||||||||| | | || |||||||| || || ||||||||||| || | || Sbjct 200288 ACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAGGT 200346 Query 157870 GTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGT 157929 | |||| |||||||||||||| ||||||||||| |||||||| ||| | ||||| || Sbjct 200347 ATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGT 200406 Query 157930 CAGGGTCGTG 157939 || ||||||| Sbjct 200407 CAAGGTCGTG 200416 >seq33933 Length=146745 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 157207 GGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCA 157266 || ||||| | || || ||||| || ||||||||||| ||| |||| |||| || Sbjct 32859 GGATCTCTGCTTTACGGAAACAATATTATCTCTGGTGCTGTTATTCCGACTTCTGCAGCT 32918 Query 157267 ATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAAC 157326 || ||| | ||||| ||||| || |||||||| ||||| ||||||| ||| || | | Sbjct 32919 ATAGGTTTACACTTTTACCCAATTTGGGAAGCGGCATCCGTTGATGAATGGTTTGGCTCC 32978 Query 157327 GGTGG 157331 ||||| Sbjct 32979 GGTGG 32983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544746047792000