Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq34118 150 2e-31 seq33222 131 2e-25 seq34317 122 1e-22 seq34415 96.9 4e-15 seq30018 96.9 4e-15 >seq34118 Length=323312 Score = 150 bits (166), Expect = 2e-31 Identities = 221/313 (71%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 179353 TTCGTTAGTGTATTTCTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCG 179412 || ||| |||||| | || || || || || || || |||||||||||||||| Sbjct 7068 TTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGT 7009 Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472 |||||||| || | || ||| ||| | | || || || ||||| || || || |||||| Sbjct 7008 TTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACA 6949 Query 179473 CTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCT 179532 | |||| ||||| ||||||||||||| ||| | |||| ||| |||| | ||| Sbjct 6948 TTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCT 6889 Query 179533 ATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTT 179592 |||||||| | || ||||| ||||| || | |||||| || || ||||| ||||| Sbjct 6888 ATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTC 6829 Query 179593 AAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTACAGCGAACCGTTTT 179652 || || | | || ||| || || || ||||| ||| |||| || |||| ||| Sbjct 6828 TGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTT 6769 Query 179653 TGGTCGCAGATCT 179665 ||||| || |||| Sbjct 6768 TGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 179413 TTTGGTGTTGCGGCGATCTTTAGATTCCTACTTTTCTTACAAGGTTTCCACAACTGGACA 179472 |||||||| || || || ||| ||||| | | || || ||||| || || || |||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 179473 CTCAACCCCTTTCACATGATGGGAGTTGCAGGTATCCTGGGTGGTGCTCTGCTCTCTGCT 179532 | ||||| ||||| |||||||||||||| ||| | |||||| | | |||| | || Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 179533 ATTCATGGAGTAACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTT 179592 |||||||| | ||| |||| ||||| || | ||||||||| || ||||| ||||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 179593 AAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATTCTATGGTTAC 179639 || || || | || ||| || || || ||||| |||||||| Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 122 bits (134), Expect = 1e-22 Identities = 141/189 (75%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 178263 CATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTG 178322 |||||||| || |||| ||||||||||||||||| ||||||||||| ||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 178323 CACTTCTTCCTCGCAGCATGGCCTGTA-----GTTGGAATCTGGTTCACCGCACTTGGTG 178377 ||||||||| | | || ||||||||| || || |||||||||| ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 178378 TATCCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGACGGAC 178437 | || |||||||| ||||| || || ||||| |||||||| ||| | | || | | Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 178438 AAGGACGTG 178446 |||| |||| Sbjct 200408 AAGGTCGTG 200416 >seq34415 Length=341782 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 138538 TACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCTGTCGTGCTGGT 138597 |||||||| || |||| || | ||||| || || || ||||| || || | |||||| Sbjct 213929 TACATCCTGGACTCTGCAGAGGCGGCAGGGATGGACCTGCCCTATTCTTGCAGGGCTGGT 213988 Query 138598 GCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGTCTGACCAGTCT 138657 ||||| | || |||||||| || | | || |||| ||||| ||||| || Sbjct 213989 GCATGCTGCACTTGTGCTGGGAAGATCGCATCCGGTTCTGTTGATCAATCTGATGGATCG 214048 Query 138658 TTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAGCATACCCCACA 138717 || |||||||| ||||||| | || |||| | | ||||||| || | ||||| || Sbjct 214049 TTTCTTGATGACAACCAAATGGGAGAGGGATATTTGCTGACTTGTGTCTCTTACCCGACC 214108 Query 138718 TCCGATTGTATAATTGAAACTGAAAAAGAGG 138748 || |||||| | ||| | ||| | || |||| Sbjct 214109 TCAGATTGTGTGATTCACACTCACAAGGAGG 214139 >seq30018 Length=17342 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 178044 ACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCACCCGTTCCAC 178103 ||||| || | |||| |||||| ||| || || ||||| | |||| |||||| || || Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 178104 ATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 178156 ||| | ||||| ||||| ||||||| ||| ||||| || | |||||||||||| Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGG 7302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605081216984000