Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq34050 96.9 8e-15 seq34154 95.1 3e-14 seq33599 91.5 3e-13 seq33753 87.8 4e-12 seq33192 87.8 4e-12 >seq34050 Length=239353 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || |||||||||||||| || || ||||| || || ||| |||||||| || ||||| Sbjct 39441 GCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTTTGTGCTATATTCTGGCTG 39500 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || ||||| || |||||||| || | || || || ||| | || |||||| ||||||| Sbjct 39501 AAAAAGCGCGGTTTGATGCCGGGGTTATCCTTCTCGAATGAGTTGATCTCGCGAGATGAG 39560 Query 131987 GCATTGCA 131994 | ||||| Sbjct 39561 GGCTTGCA 39568 >seq34154 Length=110578 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/203 (72%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 304933 TATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGG 304992 ||| ||||| |||||||||| || |||||| | || || | | | | |||||| | Sbjct 100887 TATTCAGGCTACTCAAAGATCAGGTAGACCTATCAAATCAAT-ATGTAGCAGATTAAAAG 100829 Query 304993 TAAA-GAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAA 305051 ||| |||||||| || ||||||| | ||||| ||||||||||||||| ||| | | Sbjct 100828 CAAAAGAGGGTCGAATCAGAGGTAACTTGATGGGTAAACGTGTTGATTTTTCTGCTCGGA 100769 Query 305052 GTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AATT 305110 ||| ||||| |||||| | |||| || || |||| |||| ||| || || ||| Sbjct 100768 CTGTGATCACTCCTGATCCAACTATTAACATTGATCAATTGGGAG-TCCCATGGAGTATT 100710 Query 305111 GCTTTAAAACTAACATTTCCAGA 305133 ||| | || || || | |||||| Sbjct 100709 GCTCTGAATCTCACTTATCCAGA 100687 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/204 (71%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 304933 TATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGG--TATTAGGCAACGCATTAAA 304990 ||| ||||| |||||||||| || |||||| | || |||| | | | | ||| Sbjct 106642 TATTCAGGCTACTCAAAGATCAGGTAGACCTATCAAATCAATATTTAGAA--GATTAAAA 106585 Query 304991 GGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGA 305050 | ||||||||||| || ||||||| | ||||| ||||||||||||||| ||| | Sbjct 106584 GCAAAAGAGGGTCGAATAAGAGGTAACTTGATGGGTAAACGTGTTGATTTTTATGCTCGG 106525 Query 305051 AGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGA-AAT 305109 | ||| ||||| |||||| | |||| || || |||| |||| ||| || || | Sbjct 106524 ACTGTGATCACTCCTGATCCATCTATTAACATTGATCAATTGGGAG-TCCCATGGAGTGT 106466 Query 305110 TGCTTTAAAACTAACATTTCCAGA 305133 |||| | || || || | |||||| Sbjct 106465 TGCTCTGAATCTCACTTATCCAGA 106442 >seq33599 Length=161954 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || || ||||||||||| || || ||||| || || ||| |||||||| || ||||| Sbjct 157621 GCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTTTGTGCTATATTCTGGCTG 157680 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || ||||| || |||||||| || | || || || ||| | || |||||| ||||||| Sbjct 157681 AAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAG 157740 Query 131987 GCATTGCA 131994 | ||||| Sbjct 157741 GGCTTGCA 157748 >seq33753 Length=114126 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 131867 GCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTT 131926 || |||||||||||||| || || |||| || || ||| |||||||| || ||||| Sbjct 59602 GCCTTTGCTTGTGTTGAGGGGATCATCTTCTCTGGGAGTTTTTGTGCTATATTCTGGCTG 59661 Query 131927 AAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAA 131986 || ||||| || |||||||| | | || || || ||| | || |||||| ||||||| Sbjct 59662 AAAAAGCGCGGTTTGATGCCGGAGTTGTCCTTCTCGAATGAGTTGATCTCGCGAGATGAG 59721 Query 131987 GCATTGCATACTGAATTTGCT 132007 | ||||| || |||||| Sbjct 59722 GGGTTGCACTGCGATTTTGCT 59742 >seq33192 Length=96237 Score = 87.8 bits (96), Expect = 4e-12 Identities = 197/289 (68%), Gaps = 8/289 (3%) Strand=Plus/Minus Query 279805 AGAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC 279864 ||| ||| || | ||||| || || | ||||| | ||| |||| | |||||||| Sbjct 48953 AGATTTTGTTAACAAAGAGCTTATTCTGTTTTCGATGGCTGACCTTCAAAGGTCTATTCC 48894 Query 279865 -TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAA 279923 ||| | || ||||| | |||||| || | ||||| | || || ||| || | Sbjct 48893 ATCAATGCTTG-ATGGTCTTAAACCTGGTCAAAGGAAGATCCTGTTTTGTGCTTTTAAGA 48835 Query 279924 GAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAG 279983 |||| || || |||||| |||||||| || | ||||||||||| || || ||| Sbjct 48834 GAAACTTTGTCAAGGAAGCAAAGGTTGCTCAATTCTCTGGTTATGTTTCTGAGCACTCAG 48775 Query 279984 GTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATT-TT 280042 || ||||| |||||| | | || ||| | ||| | || || || || ||| | Sbjct 48774 CATACCATCATGGTGAACAAAGTTTGCAGGGTACCATTATTGGCCTGGCTCAGAATTATG 48715 Query 280043 ATGGCTTCAAACAACTTAAATCTGCTTTC--ACCAAATGGTCAATTTGG 280089 |||| | || ||| ||||||| |||| |||||||||||||||||| Sbjct 48714 TTGGCAGC-AATAACATAAATCT--TTTCAAACCAAATGGTCAATTTGG 48669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1185635852581400