Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq34317 102 2e-17 seq30018 96.9 1e-15 >seq34317 Length=297777 Score = 102 bits (112), Expect = 2e-17 Identities = 126/169 (75%), Gaps = 10/169 (6%) Strand=Plus/Plus Query 20210 CATGGTTACTTTGGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTA 20269 |||||||| ||||| | |||||||||||||| ||| ||||||||| ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 20270 CACTTCTTCCTTGCTGCCTGGCCGGT-----GGTAGGGATTTGGTTCGCTGCCTTGGGCG 20324 ||||||||| | | ||| ||||| || |||||| || |||||| | || || | | Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAG--G 200345 Query 20325 TTTCTACA--ATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCC 20371 | || || ||||| || || || ||||||||||| || ||||| ||| Sbjct 200346 TATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCC 200394 >seq30018 Length=17342 Score = 96.9 bits (106), Expect = 1e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 19991 ACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCAC 20050 || ||||| | |||| | |||| ||| ||||| || |||| ||| | |||||| || || Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 20051 ATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 ||| | ||||| ||||||||||||| ||| || ||||| |||| ||||| ||||| Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGGTTC 7305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148692007729200