Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq34317 91.5 4e-14 >seq34317 Length=297777 Score = 91.5 bits (100), Expect = 4e-14 Identities = 123/168 (73%), Gaps = 10/168 (6%) Strand=Plus/Plus Query 29338 CACGGTTACTTTGGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTA 29397 || ||||| ||||| | |||||||||||||||||| |||||| || ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 29398 CACTTCTTCCTTGCTGCCTGGCCGGT-----GGTAGGGATTTGGTTCGCTGCCTTGGGCG 29452 ||||||||| | | ||| ||||| || |||||| || |||||| | || || | | Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTAG--G 200345 Query 29453 TTTCTACA--ATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTC 29498 | || || ||||| || || || |||||||| || || ||||| || Sbjct 200346 TATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATC 200393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146530795980400