Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq34052 100 8e-17 seq34317 84.2 6e-12 >seq34052 Length=92402 Score = 100 bits (110), Expect = 8e-17 Identities = 113/150 (75%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 18727 TGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATG 18786 ||| ||||| ||||||| || || ||||||||||| || || |||||||| ||||| Sbjct 71617 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 71558 Query 18787 ATTCCGTGTCTCCTTGCAGCTACTATTTGTTTCATTATTGCCTTCATTGCTGCACCTCCT 18846 || || | | | | || | ||||| |||||||||||||||||||| ||||| Sbjct 71557 ATCCCTACTTTATTGACCGC-AGTATTT-----ATTATTGCCTTCATTGCTGCTCCTCCA 71504 Query 18847 GTAGACATTGATGGCATCCGCGAGCCTGTT 18876 ||||| |||||||| || || || |||||| Sbjct 71503 GTAGATATTGATGGTATTCGTGAACCTGTT 71474 >seq34317 Length=297777 Score = 84.2 bits (92), Expect = 6e-12 Identities = 136/194 (70%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 19429 CATGGGTATTTTGGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTA 19488 ||||| |||||||||| | || ||||| || || |||||||| ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 19489 CATTTCTTTTTGGCTGCTTGGCCTGT-----GGTTGGCATTTGGTTTGCCGCCCTTGGGG 19543 || ||||| || | |||||||||||| ||| || || ||||| | | ||| || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTT---CACGCTTTAGG 200345 Query 19544 TA--AGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAA 19601 || |||| |||||||||||| | || || || || || ||||| ||| | |||| | Sbjct 200346 TATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAG 200405 Query 19602 CAATGGTCGTGTCA 19615 | ||||||| || Sbjct 200406 TCAAGGTCGTGACA 200419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141019066609200