Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq33784 95.1 1e-14 seq33714 95.1 1e-14 seq34050 93.3 4e-14 seq31522 87.8 2e-12 >seq33784 Length=161669 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| |||||||| | ||||||| ||||||||||||||||| | || | | | Sbjct 105643 CGCAGCACCAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCCA 105584 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || || | | | || || ||||| |||||||| || |||||||| || Sbjct 105583 TCCTCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGATCTGGGGGAATGCCTTCCTTG 105524 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| ||| | | || | |||||| | |||||| || | || | Sbjct 105523 TCCTGAATCTTTGCTTTAACATTATCAATAGTATCAGAACTCTCCACCTCAAGAGTGATG 105464 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||||| || || | || |||||||| Sbjct 105463 GTCTTCCCAGTCAAGGTCTTGACAAAGATCTGCAT 105429 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || ||||| | ||||||| ||||||||||||||||| | || | | | Sbjct 105415 CGCAGCACTAAATGGAGTGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGTGTCCTCCCA 105356 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || |||||||| || || | | | || || ||||| || |||||||| |||||||| || Sbjct 105355 TCATCGAGCTGCTTGCCAGCAAAAATCAGTCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 105296 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| ||| ||| | | || | ||||| | ||||||||| | || | Sbjct 105295 TCCTGAATCTTTGCTTTAACATTGTCAATTGTATCTGAGCTCTCCACTTCCAATGTGATG 105236 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| | || || | || ||||||||| || Sbjct 105235 GTCTTCCCAGTTAAGGTCTTGACAAAGATCTGCATGCCT 105197 >seq33714 Length=161502 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||||||| | | ||||| || |||||||||||||| | || | Sbjct 23074 CAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTGCAAGTGTCCT 23015 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||| || ||||||||||| | | |||| | ||||||||| |||||||| |||||||| Sbjct 23014 CCCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGGAATGCCTTC 22955 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| |||| | || | ||||| | ||| || || | || Sbjct 22954 CTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAACCTCCAGGGT 22895 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||| || ||||| | || ||||||||| Sbjct 22894 GATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCATG 22855 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||| | || | ||| | | | ||||||||||| |||||||| || | || Sbjct 22849 ACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAATCAGCAAGTGT 22790 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| |||||| ||||| || || | | | || || | |||||||||||||| || || Sbjct 22789 ACGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGAGGAATTCC 22730 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| ||| || |||| | || | ||||| | ||| ||||| | Sbjct 22729 TTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCAACTTCAAG 22670 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||| |||||||| | || ||||||||| Sbjct 22669 AGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCATG 22627 >seq34050 Length=239353 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || ||||||||||||||| | ||||| ||| || Sbjct 44126 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGGCAAGAGTACGGCCATCCTCA 44185 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | |||| || | |||||| || ||||| |||||||| || || Sbjct 44186 AGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCAGGAGGGATGCCTTCCTTGTCCTGG 44245 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | |||||||| ||||| || | || | ||||| Sbjct 44246 ATCTTCGCCTTCACGTTGTCAATAGTATCGGAGCTTTCCACCTCCAGGGTGATGGTTTTC 44305 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| || | |||||||||||| Sbjct 44306 CCGGTGAGAGTCTTCACGAAAATCTGCAT 44334 >seq31522 Length=43835 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 ||||| | || ||||| ||| | | || ||||| || || ||||| ||| | ||| Sbjct 29166 CGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCGGCTAGGGTT 29107 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||| |||||||||||||| | | || | | ||| ||||||||||| || ||| Sbjct 29106 CGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGAGGAATTCCT 29047 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||| | || |||||| |||| | || | ||||| | || ||||| | Sbjct 29046 TCTCTGTCCTGAATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCAACTTCTAGG 28987 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||| |||||||||||||| | || || ||||| Sbjct 28986 GTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCAT 28946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 |||| || || || || |||| ||| | || ||| ||| || |||||||| || | Sbjct 35370 TTGATTCCTTCTGGATACTGTAATCGGCAAGAGTGCGCCCATCCTCAAGCTGTTTCCCTG 35311 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | | || | ||||||||||||||||| || ||||||||||| ||| || |||| Sbjct 35310 CAAATATCAAGCGCTGTTGATCTGGAGGAATTCCTTCTTTATCCTGAATCTTCGCCTTCA 35251 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | || | ||||| | || ||||| | || | |||||| ||||||||||||| Sbjct 35250 CGTTCTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATCGTTTTCCCAGTCAGAGTTT 35191 Query 132108 TTATGAAAATCTGCAT 132123 | | || || ||||| Sbjct 35190 TCACAAAGATTTGCAT 35175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476150078664000