Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq34050 107 2e-18 seq34423 87.8 2e-12 seq31522 86.0 6e-12 >seq34050 Length=239353 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||||| || | || || |||| ||||| | | Sbjct 45018 ATGCAGATCTTTGTGAAAACCCTAACCGGCAAGACTATTACTCTCGAGGTCGAGAGCTCC 44959 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || || || ||| ||||| ||||| || ||||| || ||| Sbjct 44958 GACACCATCGACAATGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCGGACCAG 44899 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || || || | || ||| || |||||||| || | | | | || |||||||||| Sbjct 44898 CAGAGGCTGATCTTCGCCGGGAAGCAACTCGAGGACGGTCGTACCCTCGCCGATTACAAT 44839 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || || |||||| ||||||| || | ||||||| ||||| Sbjct 44838 ATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGATTGAGGGGAGG 44792 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| ||||||| || |||| || | || || ||| | | Sbjct 44790 ATGCAGATCTTCGTTAAAACCCTAACCGGCAAGACGATTACCTTGGAGGTTGAAAGCTCC 44731 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || ||| || || || || ||||| || ||||| || ||| Sbjct 44730 GATACGATTGACAACGTGAAAGCTAAGATCCAGGACAAGGAGGGAATCCCGCCAGACCAG 44671 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG-ATTACAA 25353 || || ||||||| || ||| || || || || || | ||| | |||| ||||||| Sbjct 44670 CAGAGGCTCATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACCCT-AGCGGATTACAA 44612 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || || || |||||| ||||||| || | ||||||| ||||| Sbjct 44611 TATCCAGAAGGAGTCCACCCTTCATTTGGTTCTCCGATTGAGGGGAGG 44564 >seq34423 Length=256361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || ||||| |||| ||||| | ||||| |||| || || | Sbjct 118948 CATGCAAATCTTCGTCAAAACCCTAACTGGAAAGACCATCACCCTCGAGGTGGAGAGCTC 118889 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 ||| || || || | || ||| || ||| || || ||||| || || || || || Sbjct 118888 CGACACCATTGACAACGTCAAAGCTAAGATTCAGGACAAGGAGGGAATCCCCCCGGACCA 118829 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | || ||| ||||| ||||| || | | | || ||||||||| Sbjct 118828 GCAGAGGCTGATCTTCGCCGGAAAACAGCTCGAGGACGGCCGCACCCTCGCCGATTACAA 118769 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 || || || |||||||| | ||| | ||| | | ||||||||||| Sbjct 118768 CATCCAGAAGGAATCCACTCTCCATCTCGTGCTCCGTTTGAGAGGAGG 118721 >seq31522 Length=43835 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || || ||| ||||||| | ||||| ||| | Sbjct 28946 ATGCAAATCTTTGTGAAAACTCTGACTGGGAAAACGATCACCCTAGAAGTTGAAAGCTCA 29005 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || |||||| || | ||| || || || || |||||| Sbjct 29006 GATACAATTGATAACGTGAAGGCGAAAATTCAGGACAGAGAAGGAATTCCTCCAGATCAG 29065 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | |||| || || ||||| ||||| |||| ||| | |||||||||| Sbjct 29066 CAGAGGTTGATTTTCGCGGGTAAACAGCTCGAGGATGGCCGAACCCTAGCCGATTACAAT 29125 Query 25355 ATTCAAAAAGAATCCAC 25371 || || |||||||| || Sbjct 29126 ATCCAGAAAGAATCGAC 29142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444663771168000