Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq33599 179 5e-39 seq33488 113 6e-19 seq34325 104 3e-16 seq34357 93.3 6e-13 seq31010 87.8 3e-11 seq34419 86.0 9e-11 >seq33599 Length=161954 Score = 179 bits (198), Expect = 5e-39 Identities = 286/404 (71%), Gaps = 11/404 (3%) Strand=Plus/Plus Query 1455872 CGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCG 1455931 ||||||| || || || |||||||| || ||||||||| |||||| ||| ||||||| Sbjct 157308 CGACGAGAAGCACTTTATTAAGCACGTACTTGCCTTTTTT-GCCGCCTCCGACGGCATCG 157366 Query 1455932 TGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCA-ATTGCCAGAGGCACGTTTG 1455990 | ||||| || ||||| || || ||||| |||||||| ||||| ||||| ||| | Sbjct 157367 TTTTGGAGAATCTTGCCGGACGGTTCATGAAGGAGGTCCAGATTGCG-GAGGCGCGTGCG 157425 Query 1455991 TTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATC 1456050 ||||| || ||||||||||||||||| || ||||||||||| | ||| || ||| | Sbjct 157426 TTTTATGGATTCCAGATCGCCATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTG 157485 Query 1456051 GACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTG 1456110 || || ||| ||||||| | | |||||||| | || | ||| || || || ||| Sbjct 157486 GAGACTTACATCAAGGATTCTGAAGAGAAGGATAGGTTGTTCCACGCGATTGATACTGTG 157545 Query 1456111 CCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGAC 1456170 || | ||| ||| ||||| | ||||| | ||||| || ||| || Sbjct 157546 CCCTGTGTGGAGAAGAAGGCTAAGTGGGCTCTCCGTTGGAT------TGATGGCTCGGAA 157599 Query 1456171 AC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGT 1456228 | || || ||||| | | | ||| || | || ||||| ||||| ||||| || ||| Sbjct 157600 TCATTCGCTGAGCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 157659 Query 1456229 TTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGG 1456272 || || || || || ||||| || |||||||| | ||||| || Sbjct 157660 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGG 157703 >seq33488 Length=63435 Score = 113 bits (124), Expect = 6e-19 Identities = 334/509 (66%), Gaps = 42/509 (8%) Strand=Plus/Minus Query 1455756 TCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGG 1455815 |||| |||| |||| ||| ||||| |||||| | |||| |||||||||| || ||| Sbjct 35707 TCCCAATCCAATACCCTGAGATTTGGGAGATGTACAAGAAAG-CCGAGGCCTCTTTCTGG 35649 Query 1455816 ACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGAC 1455875 || || || || || || ||| ||| ||||||| | || | |||| Sbjct 35648 ACTGCTGAAGAAGTGGATCTCTCTCAGGACCTCAATCACTGGGATACCCTCACTCCCGAC 35589 Query 1455876 GAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGC 1455935 ||| || ||||| |||||||| || || || ||| |||||| || ||||| || Sbjct 35588 GAGAAACACTTCATTAAGCACGTGCTTGCTTTCTTT-GCCGCCTCTGACGGCATTGTTTT 35530 Query 1455936 CGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTA 1455995 |||||||| |||||||||||||| | | ||||| ||| ||| || Sbjct 35529 AGAGAACCT-------------ATGAAAGAGGTCCAGGTCTCCGAGGCTCGTGCGTTCTA 35483 Query 1455996 CGGGTTCCAGATCGCCATCGAAAACATCCAC----TCTGAAACCTACTCGCTCCTGATCG 1456051 ||| ||||| ||||||||||| ||||||||| || || | ||| ||| || | | Sbjct 35482 CGGCTTCCAAATCGCCATCGAGAACATCCACTCCATCCGAGATGTACAGCCTCTTGCTAG 35423 Query 1456052 ACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGC 1456111 | | ||| |||| ||| | | |||||| | || || || || || || || | | Sbjct 35422 AGTCTTACATCAAAGACTCCGATGAGAAGAATAGACTGTTCCGTGCAATTGAAACCCTAC 35363 Query 1456112 CGTCGGTGAGGAAA--AAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGA 1456169 | | ||| ||||| |||||| ||| ||| | ||||||| | || | ||| Sbjct 35362 CTT--GTGTGGAAAACAAGGCCAACTCGGCTCTCCGCTGGATCA-----GTGGATC-CGA 35311 Query 1456170 CACTTTGCCGAGCGGCTCGTCGGC-TTTGCC-GCGTCGAGGGCATCTTTTTCTCGGGCAG 1456227 |||| ||| ||| |||||| | || || || ||||| || || || || Sbjct 35310 ATCTTT-------TGCT----GGCATTTGCCTGTGTTGAAGGGATCTTCTTTTCCGGAAG 35262 Query 1456228 TTTCTGCGCCATCTTTTGGCTCAAGAAGC 1456256 ||||||||||| || ||| | || |||| Sbjct 35261 CTTCTGCGCCATTTTCTGGTTGAAAAAGC 35233 >seq34325 Length=393795 Score = 104 bits (114), Expect = 3e-16 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||||||||| ||| || | | || ||| || | |||| || Sbjct 203742 ATCTTCAAGGTGCTGAAGCAGGTGCATCCC-GA--CATCGGA--ATC-TCTAGCAAGGCC 203795 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCGGCACCGAGGCCGG 725029 ||| ||||||||| || ||||||| || |||| || | || ||||| Sbjct 203796 ATGGGAATCATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAG-GAGGCTTC 203854 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| || || |||| ||||||| ||| ||| | | || ||||||||||||||||| Sbjct 203855 TCGTCTTGCCCGCTACAACAAGAAGCCCACCATCACCTCCCGTGAGATCCAGACCGCCGT 203914 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || | | | ||| ||| |||| | |||||||||||||| ||||| Sbjct 203915 GCGCTTGGTTCTTCCCGGAGAATTGGCGAAACACGCCGTCTCCGAAGGCAC 203965 Score = 91.5 bits (100), Expect = 2e-12 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||||||||| ||| || | | || ||| || | |||| || Sbjct 201621 ATCTTCAAGGTGCTGAAGCAGGTGCATCCC-GA--CATCGGA--ATC-TCTAGCAAGGCC 201674 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACC-GCATCGGCACCGAGGCCGG 725029 ||| ||| |||||| || ||||||| || |||| || | || ||||| Sbjct 201675 ATGGGGATTATGAACAGTTTCATCAACGATATTTTCGAGAAGCTTGCTCAG-GAGGCTTC 201733 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| || || |||| ||||||| || ||| | | || ||||||||||||||||| Sbjct 201734 TCGTCTTGCTCGCTACAACAAGAAGCCTACTATCACCTCCCGTGAGATCCAGACCGCCGT 201793 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 |||| || | | | ||| ||| |||| | ||||||||||| || || || Sbjct 201794 GCGCTTGGTTCTTCCCGGAGAATTGGCTAAACACGCCGTCTCTGAAGGAAC 201844 >seq34357 Length=244051 Score = 93.3 bits (102), Expect = 6e-13 Identities = 163/235 (69%), Gaps = 12/235 (5%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| || ||| | || | ||| |||| |||| || Sbjct 170857 ATCTTCAAGGTGCTGAAGCAGGTTCATCCCGACATCGGT-----ATC-TCCAGCAAGGCC 170910 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || |||||||||| |||| ||| | ||||| | Sbjct 170911 ATGGGCATCATGAACAGCTTCATCAACGACATCTTCGAGAAGCTCGCCCAGGAGGCTTCT 170970 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACG---CGCGAGATCCAGACCGCC 725087 || |||| || | ||||||| || ||| | ||| || ||||| ||||||||| Sbjct 170971 CGTTTGGCTCGGTACAACAAG---AAGCCGACCATCACTTCCCGTGAGATTCAGACCGCC 171027 Query 725088 GTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | || || | | || || || |||| |||||||||||| || ||||||| Sbjct 171028 GTGAGACTTGTCCTCCCTGGAGAGCTTGCCAAGCACGCCGTCTCTGAAGGCACCA 171082 >seq31010 Length=16654 Score = 87.8 bits (96), Expect = 3e-11 Identities = 164/236 (69%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 724907 CTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAA 724966 || ||||| ||||| || || ||||| ||||| | || || ||| |||| ||| Sbjct 16251 CTATATCTTTAAGGTTCTGAAACAGGTTCACCCTGATATCG---GG--ATC-TCCAGCAA 16198 Query 724967 GTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACC--GAG 725024 | ||||| |||||||||| ||| |||| || || |||| | | | | || ||| Sbjct 16197 GGCCATGGGGATCATGAACAGCTTTATCAATGATATCTTCGA--GAAGCTGGCCCAGGAG 16140 Query 725025 GCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACC 725084 || || || ||||||| ||||||| |||||| | | || ||||||||||| Sbjct 16139 GCTTCGCGGCTCGCGCGCTACAACAAGAAGCCGACGATCACCTCCCGGGAGATCCAGACG 16080 Query 725085 GCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 || ||| | || | | | ||| |||||||| | |||||||||||| ||||| || Sbjct 16079 GCGGTGAGGCTTGTGCTCCCCGGTGAACTGGCTAAGCACGCCGTCTCTGAGGGGAC 16024 >seq34419 Length=564869 Score = 86.0 bits (94), Expect = 9e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| ||||| || || || | || || ||| |||| |||| || Sbjct 341144 ATCTTCAAGGTGCTGAAGCAAGTCCATCCTGATATCG---GG--ATC-TCCAGCAAGGCC 341197 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| ||||||||| || ||||||| || |||| ||| | ||||| | Sbjct 341198 ATGGGCATCATGAACAGCTTCATCAACGATATCTTCGAGAAGCTCGCCCAAGAGGCGTCT 341257 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 ||| |||| |||| ||||||| || ||| | ||||||||||||||||| || Sbjct 341258 CGCTTGGCCCGCTACAACAAGAAGCCGACAATCACTTCCCGCGAGATCCAGACCGCTGTC 341317 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | | | ||| ||| |||| | |||||||||||| || ||||||| Sbjct 341318 AGATTGGTTCTTCCCGGTGAATTGGCAAAGCACGCCGTCTCTGAAGGCACCA 341369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7170345827738800