Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq34118 190 2e-43 seq33222 149 7e-31 seq34317 141 1e-28 seq30018 105 8e-18 >seq34118 Length=323312 Score = 190 bits (210), Expect = 2e-43 Identities = 231/315 (73%), Gaps = 0/315 (0%) Strand=Plus/Minus Query 159791 TTTTTGTCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTA 159850 ||||||| |||||| | || ||||| || ||||||||| ||||||||||| |||| Sbjct 7070 TTTTTGTTTCTGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTA 7011 Query 159851 GTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGA 159910 |||| || |||||| | || ||| ||| | | | || |||| || || || || |||| Sbjct 7010 GTTTTGGTGTAGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGA 6951 Query 159911 CCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTG 159970 | | |||| || |||||||||||||||| ||| || | || || || | || | Sbjct 6950 CATTGTACCCATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCG 6891 Query 159971 CAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACAT 160030 | || ||||||||||| ||||| || || || |||||||| || || ||||| |||| Sbjct 6890 CTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACAT 6831 Query 160031 TTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCT 160090 | || ||| |||| |||||| ||||| |||||||| ||| | ||||| |||| || Sbjct 6830 TCTGTGCTTTTAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACT 6771 Query 160091 TCTGGTCGCAGATCT 160105 | ||||| || |||| Sbjct 6770 TTTGGTCCCAAATCT 6756 >seq33222 Length=111615 Score = 149 bits (164), Expect = 7e-31 Identities = 175/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 159843 TGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCA 159902 ||| |||||||| || |||||||| || ||| ||||| | | || |||| || || || Sbjct 60581 TGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCA 60522 Query 159903 CAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACT 159962 || ||||| | ||||| || ||||||||||||||||| ||| || | |||| | | Sbjct 60521 TAATTGGACATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTT 60462 Query 159963 GTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGC 160022 | | || | || |||||||||||| |||| || || || ||||||||||| || || Sbjct 60461 GCTATGCACTATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGC 60402 Query 160023 AAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCAC 160079 ||| ||||| || ||| | || |||||| ||||| |||||||| ||||| || Sbjct 60401 AAATACATTCCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq34317 Length=297777 Score = 141 bits (156), Expect = 1e-28 Identities = 147/191 (77%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 158381 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTG 158440 ||||| || || |||| |||||||||||||| ||| ||||||||||| ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 158441 CACTTCTTCCTTGCTGCATGGCCTGT-----TGTCGGCATCTGGTTCACCGCCCTTGGCG 158495 ||||||||| | | ||| |||||||| || || |||||||||| | ||| | Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA---CGCTTTAGG 200345 Query 158496 TGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 158553 | ||| | |||||||||||||| ||||||||||| |||||||| ||| | ||||| | Sbjct 200346 TATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAG 200405 Query 158554 TCAGGGTCGTG 158564 ||| ||||||| Sbjct 200406 TCAAGGTCGTG 200416 >seq30018 Length=17342 Score = 105 bits (116), Expect = 8e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 158162 ACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCAT 158221 ||||| || | |||| |||||| ||| || || ||||||| |||| |||||| || ||| Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 158222 ATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158274 ||| | ||||| ||||| ||||||| ||| ||||| || | |||||||||||| Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGG 7302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572469599280000