Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq34317 125 9e-24 seq34118 122 1e-22 seq33222 107 2e-18 >seq34317 Length=297777 Score = 125 bits (138), Expect = 9e-24 Identities = 142/189 (75%), Gaps = 6/189 (3%) Strand=Plus/Plus Query 181686 CACGGTTACTTTGGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTG 181745 || ||||| ||||||| |||||||||||||||||| ||||||||||| ||||| | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 181746 CACTTCTTCCTCGCAGCATGGCCTGTA-----GTTGGAATCTGGTTCACCGCACTGGGCG 181800 ||||||||| | | || ||||||||| || || |||||||||| ||| | || Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 181801 TAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCTATCCTCGACGGAC 181860 | |||| |||||||| ||||| || || ||||| |||||||| || | | || | | Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 181861 AAGGACGTG 181869 |||| |||| Sbjct 200408 AAGGTCGTG 200416 >seq34118 Length=323312 Score = 122 bits (134), Expect = 1e-22 Identities = 210/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 182783 TGTGTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGT 182842 ||| ||| | || ||||| | || ||||| |||||| || ||||| |||||||| Sbjct 7060 TGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 7001 Query 182843 CGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCC 182902 || | || || | | | | | || |||| || || || || |||||| | |||| Sbjct 7000 AGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCC 6941 Query 182903 CTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGG 182962 || |||||||||||||||| ||| || |||| || |||| | ||||| ||||| Sbjct 6940 ATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGG 6881 Query 182963 TGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTT 183022 || || ||||| ||||| || | |||||| || || ||||| ||||| || || Sbjct 6880 TGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTT 6821 Query 183023 CGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACA 183082 | | ||||| || || || ||||| ||| |||| || || | |||||||| || Sbjct 6820 TAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCA 6761 Query 183083 AATCT 183087 ||||| Sbjct 6760 AATCT 6756 >seq33222 Length=111615 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 182835 TTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACA 182894 |||||||| || || || || | ||| | | || |||| || || || || |||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 182895 CTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCT 182954 | ||||| || ||||||||||||||||| ||| || |||||| | |||| | || Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 182955 ATCCATGGTGTCACAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTT 183014 || ||||||| || |||| ||||| || | ||||||||| || ||||| ||||| Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 183015 AAAGCGTTCGATTCCACTCAGGAGGAGGAGACCTATTCGATGGTTAC 183061 || || | | ||||| || || || ||||| |||||||| Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614022957472000