Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq34118 140 5e-28 seq34317 123 4e-23 seq33222 116 5e-21 >seq34118 Length=323312 Score = 140 bits (154), Expect = 5e-28 Identities = 206/292 (71%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 176286 TACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTT 176345 || || |||||||| ||| ||||||||||| || |||||||| ||| | || ||| Sbjct 7047 TATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCAACTATATTT 6988 Query 176346 AGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATG 176405 ||| | | | ||| |||| || || || || |||||| || |||| || ||||||||| Sbjct 6987 CGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCATTTCATATGATG 6928 Query 176406 GGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAA 176465 ||||||| ||| || | || || | |||| || || ||||| | ||| || ||| Sbjct 6927 GGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGTGCTACCGTAGAA 6868 Query 176466 AATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAG 176525 ||||| ||| |||||| || || || || ||| ||| || | | || || Sbjct 6867 AATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTTAAGCCAACTCAA 6808 Query 176526 GAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCT 176577 ||||| || ||||| ||| ||||||| |||| ||| ||||| ||||||| Sbjct 6807 TCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAAATCT 6756 >seq34317 Length=297777 Score = 123 bits (136), Expect = 4e-23 Identities = 139/185 (75%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 175173 CATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCACGCTCACTC 175232 ||||| || || |||| |||||||||||||| ||| ||||||||||| || || | Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 175233 CACTTCTTCTTAGCCGCATGGCCAGT-----TGTGGGTATCTGGTTCACCGCACTTGGTG 175287 ||||||||||||| || ||||| || || ||||||||||||| ||| | ||| Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTAGGTA 200347 Query 175288 TTTCCACAATGGCATTCAACCTCAATGGTTTCAACTTCAACCAGTCTGTTATCGACGGAC 175347 | || |||||||||||||| || |||||||| |||||||| || || | || | | Sbjct 200348 TCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 200407 Query 175348 AAGGT 175352 ||||| Sbjct 200408 AAGGT 200412 >seq33222 Length=111615 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 176325 TTTGGTGTGGCAGCAATCTTTAGATTCCTATTGTTTCTTCAGGGTTTCCACAACTGGACA 176384 |||||||| ||||| || ||| ||||| | | ||| |||| || || || || |||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 176385 CTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCA 176444 ||||||| || ||||||||||||||||| ||| || | |||| | | |||| | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 176445 ATCCATGGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGA 176488 || ||||| | |||| | |||||||| ||| ||||||||| || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGA 60408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729223393112000