Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq34317 129 7e-25 seq34118 127 2e-24 seq33222 104 3e-17 >seq34317 Length=297777 Score = 129 bits (142), Expect = 7e-25 Identities = 145/193 (75%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 178550 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTC 178609 || |||||| || || |||| |||||||||||||||||| ||||||||||| ||||| Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 178610 ACTGCACTTCTTCCTCGCAGCATGGCCTGTA-----GTTGGAATCTGGTTCACCGCACTG 178664 | ||||||||| | | || ||||||||| || || |||||||||| ||| | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA-CGCTTTA 200343 Query 178665 GGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAACTTCAACCAGTCCATCCTCGAC 178724 || | |||| |||||||| ||||| || || ||||| |||||||| ||| | | || Sbjct 200344 GGTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGAT 200403 Query 178725 GGACAAGGACGTG 178737 | ||||| |||| Sbjct 200404 AGTCAAGGTCGTG 200416 >seq34118 Length=323312 Score = 127 bits (140), Expect = 2e-24 Identities = 211/305 (69%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 179645 TGTTTTCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGT 179704 ||| ||| | || ||||| | || ||||| |||||| || ||||| |||||||| Sbjct 7060 TGTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 7001 Query 179705 CGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACGCTCAACCC 179764 || | || || | | | | || || |||| || || || || ||||| | |||| Sbjct 7000 AGCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCC 6941 Query 179765 CTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCTATCCATGG 179824 || |||||||||||||||| ||| || | || || |||| | ||||| ||||| Sbjct 6940 ATTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGG 6881 Query 179825 AGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTT 179884 | ||| ||||| ||||| || | |||||| || || |||||||| || || || Sbjct 6880 TGCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTT 6821 Query 179885 TGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCA 179944 | | | || || ||||| |||||||| ||| | ||||| |||| ||| ||||| || Sbjct 6820 TAAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCA 6761 Query 179945 GATCT 179949 |||| Sbjct 6760 AATCT 6756 >seq33222 Length=111615 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 179697 TTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCAGGGTTTCCACAACTGGACG 179756 |||||||| || || || || | ||| | | || |||| || || || || ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 179757 CTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCT 179816 | ||||| || ||||||||||||||||| ||| || | || | | |||| | || Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 179817 ATCCATGGAGTTACTGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAATACCTTT 179876 || ||||| | |||| |||| ||||| || | ||||||||| || |||||||| || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 179877 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 179923 || ||| | | || || ||||| |||||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605423285712000