Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq34317 147 2e-30 seq34118 129 6e-25 seq33222 107 2e-18 seq30018 105 7e-18 >seq34317 Length=297777 Score = 147 bits (162), Expect = 2e-30 Identities = 148/191 (77%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 159084 CATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTG 159143 |||||||| || |||| |||||||||||||| ||| ||||||||||| ||||| || Sbjct 200229 CATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTA 200288 Query 159144 CACTTCTTCCTTGCTGCATGGCCTGT-----TGTCGGCATCTGGTTCACCGCCCTTGGCG 159198 ||||||||| | | ||| |||||||| || || |||||||||| | ||| | Sbjct 200289 CACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCA---CGCTTTAGG 200345 Query 159199 TGTCA--ACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGG 159256 | ||| | |||||||||||||| ||||||||||| |||||||| ||| | ||||| | Sbjct 200346 TATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTGATAG 200405 Query 159257 TCAGGGTCGTG 159267 ||| ||||||| Sbjct 200406 TCAAGGTCGTG 200416 >seq34118 Length=323312 Score = 129 bits (142), Expect = 6e-25 Identities = 211/304 (69%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 160322 GTATTCCTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTG 160381 |||||| | || || || | |||||||| ||||||| || || || ||||| || Sbjct 7059 GTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTA 7000 Query 160382 GCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCC 160441 ||| | || ||| ||| | | | || ||||||| ||||| || ||||| | |||| Sbjct 6999 GCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCA 6940 Query 160442 TTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCCATCCATGGC 160501 || |||||||||||||||| ||| || | || || |||| | || || ||||| Sbjct 6939 TTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGT 6880 Query 160502 GTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTT 160561 | ||| ||||| || || | | |||||| || || |||||||| || || ||| Sbjct 6879 GCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTT 6820 Query 160562 GATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAG 160621 | | || || ||||| |||||||| ||| | ||||| |||| ||| ||||| || Sbjct 6819 AAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAA 6760 Query 160622 ATCT 160625 |||| Sbjct 6759 ATCT 6756 >seq33222 Length=111615 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 160373 TTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACG 160432 ||||| || ||||| || ||| ||||| | | || ||||||| ||||| || ||||| Sbjct 60571 TTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGACA 60512 Query 160433 CTTAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTGCTCAGTGCC 160492 | ||||| || ||||||||||||||||| ||| || | || | | |||| | | Sbjct 60511 TTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCACT 60452 Query 160493 ATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTT 160552 || ||||| | |||| |||| || || | | ||||||||| || |||||||| || Sbjct 60451 ATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTC 60392 Query 160553 AAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCAC 160599 || ||| | | || || ||||| |||||||| ||||| || Sbjct 60391 CGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 >seq30018 Length=17342 Score = 105 bits (116), Expect = 7e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 158865 ACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCAT 158924 ||||| || | |||| |||||| ||| || || ||||||| |||| |||||| || ||| Sbjct 7190 ACTTTCAATTTCATGATTGTATCCCAGGCCGAGCACAACACTCTTACGCACCCATTTCAT 7249 Query 158925 ATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGG 158977 ||| | ||||| ||||| ||||||| ||| ||||| || | |||||||||||| Sbjct 7250 ATGTTAGGTGTAGCTGGTGTATTCGATGGCTCTCTATTATGTGCTATGCATGG 7302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551939081792000