Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq34118 152 6e-32 seq34317 127 2e-24 seq33222 118 1e-21 >seq34118 Length=323312 Score = 152 bits (168), Expect = 6e-32 Identities = 216/304 (71%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 180444 GTATTTCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTA 180503 ||||| | || || || || |||||||| ||||||||||||| || |||||| ||| Sbjct 7059 GTATTCTTGATTTATCCGCTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTA 7000 Query 180504 GCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCC 180563 ||| | || ||| ||| | | |||||| |||| || || || || ||||| | |||| Sbjct 6999 GCAACTATATTTCGATCCATCCTCTTTTTTCAAGGGTTTCATAATTGGACATTGTACCCA 6940 Query 180564 TTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGC 180623 || |||||||||||||||| ||| || | || || ||||||| || || ||||| Sbjct 6939 TTTCATATGATGGGAGTTGTCGGTGTATTGGGCACTGCCTTGCTATGCGCTATTCATGGT 6880 Query 180624 GTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTT 180683 | || || || || || | | |||||| || || ||||| || || || ||| Sbjct 6879 GCTACCGTAGAAAATACTTTATTTGAAGACGGTGATGGTGCAAATACATTCTGTGCTTTT 6820 Query 180684 GATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAG 180743 | |||| ||| || |||||||| || ||| | ||||| |||| ||| ||||| || Sbjct 6819 AAGCCAACTCAATCTGAAGAAACTTATTCAATGATTACTGCTAACCACTTTTGGTCCCAA 6760 Query 180744 ATCT 180747 |||| Sbjct 6759 ATCT 6756 >seq34317 Length=297777 Score = 127 bits (140), Expect = 2e-24 Identities = 147/195 (75%), Gaps = 10/195 (5%) Strand=Plus/Plus Query 179562 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTC 179621 || |||||| || || |||| ||||||||||||||||| || |||||||| || || Sbjct 200225 AGAACATGGTTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTCAACAACTCTCGTTC 200284 Query 179622 TTTGCACTTCTTCCTTGCTGCGTGGCCGGT-----TGTCGGCATCTGGTTCACTGCTCTT 179676 || ||||||||| | | ||| ||||| || || || ||||||||||| ||| | Sbjct 200285 GTTACACTTCTTCTTAGTTGCTTGGCCTGTAGTAGGGTAGGTATCTGGTTCAC-GCTTTA 200343 Query 179677 GGCGTGTCA--ACCATGGCGTTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTG 179734 | || ||| | ||||| |||||||| ||||||||||| |||||||| ||| | ||| Sbjct 200344 G--GTATCAGCATTATGGCATTCAACCTAAACGGTTTCAATTTCAACCAATCCGTAGTTG 200401 Query 179735 ACGGTCAAGGACGTG 179749 | ||||||| |||| Sbjct 200402 ATAGTCAAGGTCGTG 200416 >seq33222 Length=111615 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 180494 TTTTGGGGTAGCAGCAATCTTTAGATTCCTACTCTTTCTTCAGGGTTTCCACAACTGGAC 180553 |||||| |||||||| || ||| ||||| | ||||| |||| || || || || ||||| Sbjct 60572 TTTTGGTGTAGCAGCTATATTTCGATTCATCATCTTTTTTCAAGGGTTTCATAATTGGAC 60513 Query 180554 CCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGC 180613 | ||||| || ||||||||||||||||| ||| || | |||| | ||||||| | Sbjct 60512 ATTGAACCCATTTCATATGATGGGAGTTGCCGGTGTATTGGGTGCTCCCTTGCTATGCAC 60453 Query 180614 AATCCATGGCGTAACTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTT 180673 || ||||| | ||| | || || || | | ||||||||| || ||||| || || Sbjct 60452 TATTCATGGTGCTACTATAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATT 60393 Query 180674 TAAGGCATTTGATTCAACGCAAGAGGAGGAAACTTACTCTATGGTCAC 180721 || ||| | |||| ||| || |||||||| || ||||| || Sbjct 60392 CCGCGCTTTTAACCCAACTCAATCTGAAGAAACTTATTCAATGGTTAC 60345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609739106112000