Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq34321 116 5e-21 seq33140 116 5e-21 seq33488 100 4e-16 seq33558 86.0 9e-12 >seq34321 Length=180555 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 |||||||| || | ||||| ||||||| ||| | || | ||||| |||| ||| ||| Sbjct 112340 CCTCCCTGGTCAACATATCTTGCAGTGTCATTGAACACACGTAGCATTGGAACAATTCCA 112399 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||| ||| ||| ||||| || | || || || ||| | ||| Sbjct 112400 TTGGATGTTCCATTTGTCCCACGAATGTAACTCCCAGTAGCACGGATGTTATGCACAGAG 112459 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||| || || || |||| |||||| || | || ||||||||| Sbjct 112460 ACACCAATTCCACCCGCTGACTTGCTAATTACAGCACACTCCTTTAGAGTATCATATATA 112519 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | ||| || |||||| Sbjct 112520 CCCTCAATGCTATCATCTTTCATGCAGATAAGGAAGCAGCTA 112561 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 ||| || |||||||| | ||| ||||| || |||||||||||| || ||| | || || Sbjct 112755 AGTGCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCGTTGAGACATCAAATG 112814 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 ||||| || || ||||| ||||| || ||||| || | | || | |||||| Sbjct 112815 ATATGTCCTGATGGCAGATTCAATATCATTCTTGTGAATCCCAACAGAAACTCTCATCAA 112874 Query 70110 CATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAG 70169 ||| || || || | ||| || ||| | | ||||| ||||| || |||| || Sbjct 112875 CATGTGTTGTGGCCTTTCCACAACTTTTCCCTGAACCTTCAAGAGGTAAGACCTTTCAAG 112934 Query 70170 AGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || |||||||| | || |||||||| || || || || Sbjct 112935 GGTTTTGAAACCAAAATAATCATAATCAAAGTCTCGGTCATATATGAT 112982 >seq33140 Length=116131 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || ||||| || | |||| ||||| | ||| | || | ||||| |||| ||| ||| Sbjct 77396 CCCCCCTGGTCAACATATCGTGCAGTATCATTGAACACACGTAGCATAGGAACAATTCCA 77455 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| || | || || ||||| | ||| Sbjct 77456 TTGGATGTCCCATTTGTTCCACGAATATAACTCCCAGTAGCACGGATATTGTGCACAGAA 77515 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| ||||||||||| ||| |||| |||||| || | || |||||||| Sbjct 77516 ACACCAATTCCTCCTGCTGATTTGCTAATTACAGCACACTCCTTGAGAGTATCATATATG 77575 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 || || |||||||| ||| ||||| | |||||| |||||| Sbjct 77576 CCATCAATGCTATCCTCTTTCATGCAGATAAGAAAGCAGCTA 77617 Score = 86.0 bits (94), Expect = 9e-12 Identities = 126/174 (72%), Gaps = 6/174 (3%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| |||||||||| ||||| || | |||||| || ||||| ||| ||||||| Sbjct 76852 CTCTGTTTCATATTGCGTATAGAGTTTGTTGAATTCTTCACCCCAGCAATCTGCCAATCC 76911 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTT--AACTCGTTTCATA 69606 ||| ||||||||||| | ||||||||| ||| | ||| |||| | |||| Sbjct 76912 AGGGGCCTCATTTGGACAAAACAATGACCATTGCCCAT--TGCTTTGTACTCTCTCCATA 76969 Query 69607 AATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||||| || | ||| ||||| ||| || ||||| | || || || ||||| Sbjct 76970 AATAGATCAGGTACCCAGAGAGC-ATAGAAAAGATCCCGGGCTCGATGCTCTTC 77022 >seq33488 Length=63435 Score = 100 bits (110), Expect = 4e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 40028 GCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTC 40087 |||||||| || || | || || ||||| || | ||| || ||||| || | ||| | Sbjct 35548 GCGGCAAAGAAAGCAAGCACGTGCTTAATGAAGTGTTTCTCGTCGGGAGTGAGGGTATCC 35607 Query 40088 CAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCC 40147 |||| ||||| || | || | ||| ||||||||||| ||||| || || ||||| || Sbjct 35608 CAGTGATTGAGGTCCTGAGAGAGATCCACTTCTTCAGCAGTCCAGAAAGAGGCCTCGGCT 35667 Query 40148 TTTTTGTACATGTTCCATATATCACGATATTGTATTGG 40185 || |||||||| | ||| || ||| | ||||| ||||| Sbjct 35668 TTCTTGTACATCTCCCAAATCTCAGGGTATTGGATTGG 35705 >seq33558 Length=55639 Score = 86.0 bits (94), Expect = 9e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 39617 CAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGT 39676 ||||| |||||||| ||||| ||||||||||| ||| | ||| || || |||| | Sbjct 42675 CAGGCAAAGTCACAGTGTAGACCCTCATCTCTGGAAATAAGTTCATTTGAGAATGCCAAG 42616 Query 39677 CCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAG 39736 || |||||||| | | |||||| |||||||| |||||| |||||| | ||| ||||| Sbjct 42615 CCTGGCATTAGGCACCTCTTTTTAAGCCAAAAAATGGCA-CAAAAGCT-GGGAAGAGAAG 42558 Query 39737 A 39737 | Sbjct 42557 A 42557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686244215736000