Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq33599 129 5e-25 seq34368 87.8 1e-12 >seq33599 Length=161954 Score = 129 bits (142), Expect = 5e-25 Identities = 236/343 (69%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 |||||||| || || || ||||| || ||||| || || || ||||||||||||||| | Sbjct 157426 TTTTATGGATTCCAGATCGCCATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTTG 157485 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT- 44061 || || |||||||| ||| | |||||| || | ||||| | ||||| || || || Sbjct 157486 GAGACTTACATCAAGGATTCTGAAGAGAAGGATAGGTTGTTCCACGCGATTGATACTGTG 157545 Query 44062 ACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTT 44121 |||| | | | | || || | ||||| || ||||| || || || || Sbjct 157546 CCCTGTG-TGGAGAAGAAGGCTAAGTGGGCTCTCCGTTGGATTGATGGCTCGGAATCATT 157604 Query 44122 TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGC 44181 | || || | | || || || ||| || || || ||||| || || ||| Sbjct 157605 CGCTGAGCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTTTG 157664 Query 44182 GGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTT 44241 || ||||| ||| | || || || ||||||||||| |||||| | || || |||||||| Sbjct 157665 TGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAATGAGTT 157724 Query 44242 AATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || || ||||| ||||| || ||||||||||| ||| || Sbjct 157725 GATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGCGTGCATG 157767 >seq34368 Length=429229 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 |||||||| || |||||||||||| ||||| ||| |||| ||| | || | ||||||| Sbjct 371785 CAGTTTTATGTAGCCAATGGTGAACTATCATGCCAAATGTACCAACGCTCTGCTGACATG 371726 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || || || || ||||||||||| || ||| | || || || | |||||||| || Sbjct 371725 GGTCTTGGAGTGCCGTTTAACATTGCATCTTACTCCCTTCTGACATGCATGATTGCCCAT 371666 Query 41199 GTT 41201 ||| Sbjct 371665 GTT 371663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397081074787000