Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq31522 132 4e-26 seq34423 104 2e-17 seq34050 104 2e-17 seq34042 104 2e-17 seq33714 89.7 4e-13 >seq31522 Length=43835 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || |||||||||| || |||| ||| | ||| || ||||| || |||||||| ||| Sbjct 29172 CCACCGCGCAACCTCAGAACCAGATGCAGCGTCGATTCTTTCTGGATATTGTAATCGGCT 29113 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || | || |||||||||||||| ||| |||| | | ||| ||||| || || Sbjct 29112 AGGGTTCGGCCATCCTCGAGCTGTTTACCCGCGAAAATCAACCTCTGCTGATCTGGAGGA 29053 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||| | || || || |||| | | || | || |||| | ||||||| Sbjct 29052 ATTCCTTCTCTGTCCTGAATTTTCGCCTTCACGTTATCAATTGTATCTGAGCTTTCAACT 28993 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCT 27251 ||||| || || | ||| || ||||||||||||||||||||||||||| || Sbjct 28992 TCTAGGGTGATCGTTTTCCCAGTCAGAGTTTTCACAAAGATTTGCATACCT 28942 Score = 111 bits (122), Expect = 1e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||| |||| ||| | ||||| | || || |||||||| || Sbjct 35371 GTTGATTCCTTCTGGATACTGTAATCGGCAAGAGTGCGCCCATCCTCAAGCTGTTTCCCT 35312 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||||||||||| || || | || |||||||| ||||| ||| Sbjct 35311 GCAAATATCAAGCGCTGTTGATCTGGAGGAATTCCTTCTTTATCCTGAATCTTCGCCTTC 35252 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | || |||| | |||||||||||| || || | ||| || ||||||||| Sbjct 35251 ACGTTCTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATCGTTTTCCCAGTCAGAGTT 35192 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||||||||||||| || Sbjct 35191 TTCACAAAGATTTGCATACCT 35171 >seq34423 Length=256361 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | ||||| || | || || || || || || ||||| ||| Sbjct 118493 CCACCGCGGAGCCTGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCGGCG 118552 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| ||||||||||| |||||| | || || | ||| ||||| || || Sbjct 118553 AGGGTACGGCCGTCCTCGAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGG 118612 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || ||||||| || | | | || | ||||||| | |||||| Sbjct 118613 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTATCAATTGTGTCTGAGCTTTCAACC 118672 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || | ||||| || || ||||| |||||||||||||| Sbjct 118673 TCCAGAGTGATGGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCAT 118719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | ||| || | || | ||| | || || || || || || ||||| ||| Sbjct 118719 TGCCTCCTCTCAAACGGAGCACGAGATGGAGAGTGGATTCCTTCTGGATGTTGTAATCGG 118778 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| |||| ||||||||||| |||||| | || || | ||| || ||||| | Sbjct 118779 CGAGGGTGCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGGG 118838 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||| ||| | | | || | ||||| | | || | Sbjct 118839 GGATTCCCTCCTTGTCCTGAATCTTAGCTTTGACGTTGTCAATGGTGTCGGAGCTCTCCA 118898 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | || || || || ||||| || ||||||||||| Sbjct 118899 CCTCGAGGGTGATGGTCTTTCCAGTTAGGGTTTTGACGAAGATTTGCAT 118947 >seq34050 Length=239353 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || || |||||||| | || || || || ||||||||||||||| Sbjct 44336 CCTCCACGGAGCCTCAGCACCAAATGAAGGGTGGATTCCTTCTGAATATTGTAGTCGGCT 44395 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || ||||| || |||||| | || || | ||| || || || || Sbjct 44396 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGG 44455 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | | |||| ||||| | | |||||| Sbjct 44456 ATTCCCTCCTTGTCTTGGATCTTAGCCTTCACGTTGTCTATGGTGTCAGAGCTTTCAACC 44515 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||||| || || ||||| || ||||| ||||| Sbjct 44516 TCCAAGGTAATAGTCTTGCCGGTTAGGGTTTTAACGAAGATCTGCAT 44562 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| || | |||||||| | || || || || || |||||||| ||| Sbjct 44792 CCTCCCCTCAATCGGAGAACCAAATGAAGGGTGGACTCCTTCTGGATATTGTAATCGGCG 44851 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| ||||| || || |||||| | || || | ||| || |||||||| Sbjct 44852 AGGGTACGACCGTCCTCGAGTTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGG 44911 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| ||||| |||||| || | | || | ||||| | | || || Sbjct 44912 ATGCCCTCCTTATCTTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCGACC 44971 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| ||||| || || |||||||||||||| ||||| Sbjct 44972 TCGAGAGTAATAGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 45018 >seq34042 Length=367129 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | |||| |||| |||||||| || ||| Sbjct 85747 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCG 85806 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || |||||||| | || || || || |||||| ||| Sbjct 85807 GCGAAGATGAGCCGCTGCTGGTCCGGCGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTC 85866 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| || || || || | || |||||||| || Sbjct 85867 ACATTGTCGATGGTGTCCGACGATTCAACCTCGAGGGTGATCGTCTTCCCCGTCAGGGTC 85926 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 85927 TTCACAAAGATCTGCAT 85943 >seq33714 Length=161502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-G 27077 |||| || |||| || | || | ||| | || || |||||||| ||||||||||| | Sbjct 22337 TGCCACCACGCAGACGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATATTGTAGTCTG 22278 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | | || | ||||| ||||| || || || |||| || | ||||||||| || Sbjct 22277 CT-AGAGTACGGCCATCTTCAAGCTGCTTTCCAGCAAAAATAAGCCTCTGTTGATCTGGG 22219 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || ||||| ||||| |||| | || | || |||| | ||| Sbjct 22218 GGAATCCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCTGAGCTCTCA 22159 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || | ||||| || || ||||| |||||||| |||||| Sbjct 22158 ACCTCAAGAGTGATGGTCTTGCCAGTTAGTGTTTTGACAAAGATCTGCATA 22108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | || | ||| | || || |||||||| || ||||| || Sbjct 22856 TGCCACCACGCAGGCGGAGGACAAGATGGAGGGTGGACTCTTTTTGGATGTTGTAATCAG 22797 Query 27079 TCATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || || | || | ||||| ||||| || || || |||| || | |||||||| || Sbjct 22796 -CAAGTGTACGACCATCTTCAAGCTGCTTTCCAGCAAAAATCAGCCTTTGTTGATCTGGA 22738 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || ||||| ||||| |||| | || | || || | | ||| Sbjct 22737 GGAATTCCTTCCTTATCTTGAATCTTAGCCTTCACATTGTCAATGGTATCCGAGCTCTCA 22678 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| ||||| || | ||||| || ||||||||||||||||| ||||| Sbjct 22677 ACTTCAAGAGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 22628 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| |||| |||||||| | |||||| || || ||||| |||||||| | Sbjct 23082 CCCCCCCTCAATCGCAGCACCAAATGGAGCGTAGACTCCTTCTGAATGTTGTAGTCTG-C 23024 Query 27081 ATGT-TGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | | | | || || ||||||||||| || | || | ||||||||| || || || Sbjct 23023 AAGTGTCCTCCCATCATCCAGCTGTTTACCTGCAAAGATCAAACGCTGTTGGTCTGGAGG 22964 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | || || || || |||||| |||| | || | || |||| ||||| Sbjct 22963 AATGCCTTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATGGTATCTGAACTCTCAAC 22904 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | || || || || ||||| |||||||| ||||| Sbjct 22903 CTCCAGGGTGATGGTCTTCCCAGTTAGCGTTTTGACAAAGATCTGCAT 22856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424533554068800