Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq34345 131 2e-25 seq33599 120 4e-22 seq34050 102 1e-16 seq33462 93.3 5e-14 seq33753 87.8 2e-12 seq34321 86.0 8e-12 seq33558 84.2 3e-11 seq32253 84.2 3e-11 >seq34345 Length=307576 Score = 131 bits (144), Expect = 2e-25 Identities = 297/447 (66%), Gaps = 0/447 (0%) Strand=Plus/Minus Query 11452 ATCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGC 11511 |||||| ||||| || | | | ||| ||||| ||||| | ||||||||||| || Sbjct 56845 ATCAAACCGACCAGGCCTCAACAAGGCTGAGTCAAGAATATCAGCACGATTAGTGGCGGC 56786 Query 11512 AATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAAT 11571 |||||| | || || || | ||||| || ||||| || || || | ||| || | Sbjct 56785 AATAACTATGATTCCGGTGTTTCCTTCAAAACCGTCCATTTCTGTCAGGAGTTGGTTTAG 56726 Query 11572 TGTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGC 11631 ||||| |||||||| ||||| || | ||| | | | |||| || || || Sbjct 56725 GGTTTGCTCTCTCTCGTCATTCCCTCCGCCAATACCGGTTCCTCTTTGCCGCCCAACAGC 56666 Query 11632 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 11691 |||||| ||||||| || ||||| || || ||||| ||| | | || || || Sbjct 56665 ATCAATTTCATCAACAAATACAATGCAGGGAGCGTTTTCCTTGGCTTTCTTGAAAAGGTC 56606 Query 11692 GCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTG 11751 || || | ||||| ||||||||||||||||| ||||| | || | || | Sbjct 56605 ACGGACACGAGATGCACCGACACCAACAAACATCTCGACAAATTCTGAACCTGAAATCGA 56546 Query 11752 GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACC 11811 || ||| || ||| | |||||| || |||||| ||| || |||||||| || ||||| Sbjct 56545 GAAGAAAGGAACACCGGCTTCACCAGCTATGGCTTTGGCTAGTAGGGTCTTCCCGGTACC 56486 Query 11812 TGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATATCTCTC 11871 || ||| | ||||| | ||| ||||| || ||| | || | | ||||| Sbjct 56485 AGGAGGACCGACAAGAAGAACTCCTTTAGGGATGCGTGCTCCAACTGCAGTAAACCTCTC 56426 Query 11872 GGGTTGCTTGAGAAAATCCACAATCTC 11898 ||| | ||| | || ||||| | ||| Sbjct 56425 GGGCTTCTTTAAGAACTCCACCACCTC 56399 >seq33599 Length=161954 Score = 120 bits (132), Expect = 4e-22 Identities = 203/289 (70%), Gaps = 15/289 (5%) Strand=Plus/Minus Query 122648 AGAGC-TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAG 122706 ||||| | |||| |||| || ||| | ||||||||||| || || | ||||| ||| Sbjct 157771 AGAGCATGCACG-CAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAG 157713 Query 122707 AAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCG 122766 ||| | | || ||||| | ||| ||||| |||| ||| | ||||| || || ||| Sbjct 157712 AAGGACAACCCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCA 157653 Query 122767 GAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA--GCGAG 122824 ||||||||||| ||||| ||||| || || || || | || || ||||| || |||| Sbjct 157652 GAGAAGAAGATCCCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGATTCCGAG 157593 Query 122825 ACTTTGCATCAAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTT 122884 |||||| ||| | ||||| || ||||||||||| | ||| || ||||| | Sbjct 157592 -----CCATCAATCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTAT 157538 Query 122885 GGATGGCTTCAAATAAC---TGCTTCTTTTCAGATCCATCCTTAATGTA 122930 || || | || ||| | ||||| |||||| |||||| ||||| Sbjct 157537 CAATCGCGTGGAACAACCTATCCTTCTCTTCAGA---ATCCTTGATGTA 157492 >seq34050 Length=239353 Score = 102 bits (112), Expect = 1e-16 Identities = 128/173 (74%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 122648 AGAGC-TCCACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAG 122706 ||||| | |||| |||| || ||| | ||||||||||| || || | ||||| ||| Sbjct 39591 AGAGCATGCACG-CAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAG 39533 Query 122707 AAGCATAGACCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCG 122766 ||| ||| || ||||| | ||| ||||| |||| ||| | ||||| || || ||| Sbjct 39532 AAGGATAACCCCGGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCA 39473 Query 122767 GAGAAGAAGATACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||||||||| ||||| ||||| ||||| || || | || || ||||| || Sbjct 39472 GAGAAGAAGATCCCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 39420 >seq33462 Length=126448 Score = 93.3 bits (102), Expect = 5e-14 Identities = 190/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 11540 AAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGC 11599 || |||||||| || || | | |||||||| || || ||||| ||||||||| | | Sbjct 81234 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCACCC 81293 Query 11600 ATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | || || | | ||| | ||||| |||||||||||||||||||| ||||| || Sbjct 81294 CCAAGCCCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGCA- 81352 Query 11660 GGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAAC 11718 || | ||| | ||| | ||||| | ||| | || || || |||||||| || Sbjct 81353 GGGGGCTTTAGACTTGGCCTTCTCAAACAAATCCCTCACTCTGGAAGCCCCCACACCCAC 81412 Query 11719 AAACATCTCCACAAAGTTTGCGGCAGAGCACTGG--ATGAATGGGACATTTGATTCACCC 11776 ||| | ||||||||| | || || ||||| || | |||||| || | ||||| Sbjct 81413 AAATAACTCCACAAACTCTGAAGC--AGCACAGGAAAAGAATGGAACCCCAGCCTCACCA 81470 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || | |||| || | |||||||| || || || || Sbjct 81471 GCCACTGCTCTAGCCAAAAGGGTCTTCCCAGTTCCAGG 81508 >seq33753 Length=114126 Score = 87.8 bits (96), Expect = 2e-12 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| | ||||||||||| || || | ||||| |||||| | | | Sbjct 59741 GCAAAATCGCAGTGCAACCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACTCC 59682 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| | ||| ||||| |||| ||| | ||||| || || ||| ||||||| ||| Sbjct 59681 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGATGATC 59622 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGA 122819 ||||| ||||| ||||| || || | || || ||||| || Sbjct 59621 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 59581 >seq34321 Length=180555 Score = 86.0 bits (94), Expect = 8e-12 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 111940 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 111999 ||| || ||||| || |||||||| || || ||||| | || ||| ||||| | ||| Sbjct 112743 CTGGGGCCTTGGAGTGCCAGCATTAAAAAGTGTTGGAGAAGCATGAGTGAACCATCGTTG 112802 Query 112000 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGC 112059 |||||| | |||||| | | |||| ||||| || | | ||| || || | | Sbjct 112803 AGACATCAAATGATATGTCCTGATGGCAGATTCAATATCATTCTTGTGAATCCCAACAGA 112862 Query 112060 GACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 112117 || | ||| ||||||| ||||| |||||| | | || | || || || |||| Sbjct 112863 AACTCTCATCAACATGTGTTGTGGCCTTTCCACAACTTTTCCCT-GAACC-TTCAAGAGG 112920 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 || | | ||||||||||||| |||||| ||| || ||||| |||| || Sbjct 112921 TAAGACCTTTCAAGGGTTTTGAAACCAAAATAATCATAATCAAAGTCTCG 112970 >seq33558 Length=55639 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAA-GCATAGAC 122716 |||||| || ||| ||||||||||||| ||||||||||||||||||||| || || | Sbjct 42673 GGCAAAGTCACAGTGTAGACCCTCATCTCTGGAAATAAGTTCATTTGAGAATGCCAAG-C 42615 Query 122717 CTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 ||||||| || | || ||| || | |||| |||| || || || Sbjct 42614 CTGGCATTAGGCACCTCTTTTTAAGCCAAAAAATGGCACAAAA 42572 >seq32253 Length=54634 Score = 84.2 bits (92), Expect = 3e-11 Identities = 189/280 (68%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 11617 TTGCT-TGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGG 11675 ||||| |||| | ||||||||||||||||||||| | |||| ||| | || | | Sbjct 15786 TTGCTCTGCCAATCGCATCAATCTCATCAATGAAAATTATACTAGGTGCACATTGTCTTG 15727 Query 11676 CGATTTCAAAGA-GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAG 11734 | || ||| | | || | |||||| | || || |||||||||||||||| ||| Sbjct 15726 CCTCTTGAAATAAGCTC-CTAACCCTAGCAGGCCCAACTCCAACAAACATCTCCATAAAA 15668 Query 11735 TTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGG 11794 | || ||||| || || || ||| ||||| || || ||||| || || Sbjct 15667 TCTGACCCAGAGATGGAGAGAAAAGGCACACCAGATTCTCCTGCCGTGGCTTTAGCTAGT 15608 Query 11795 AGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 || |||||||| ||||| || |||| | ||||| || || ||| || ||||| || Sbjct 15607 AGTGTCTTTCCAGTACCAGGAGGACCCACAAGAAGAGCCCCCTTGGGAATTTTGGCTCCT 15548 Query 11855 CTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAA 11894 | | |||| | | ||| | ||| ||||| | ||||| Sbjct 15547 AATTCTTCATATTTTTTGGGGTTCTTTAGAAAGTGCACAA 15508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627424379040000