Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq33599 138 1e-27 seq34050 120 4e-22 seq33753 114 2e-20 seq33462 98.7 1e-15 >seq33599 Length=161954 Score = 138 bits (152), Expect = 1e-27 Identities = 198/277 (71%), Gaps = 13/277 (5%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||| || || ||||| | |||||||||||| ||| || Sbjct 157760 GCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCC 157701 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| ||||| |||| |||||| || |||||||| ||||||||||||||| Sbjct 157700 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATC 157641 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA--GCGGGACTTTGTATCAA 130193 ||||| ||||| ||||| || || | ||||||||| || || || | | ||||| Sbjct 157640 CCCTCAACACAAGCGAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCC-----ATCAA 157586 Query 130194 ACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAA 130253 ||| | ||||||| ||||| ||||| | ||| || || || | ||||| | | Sbjct 157585 TCCAACGGAGAGCCCACTTAGCCTTCTTCTCCACACAGGGCACAGTATCAATCGCGTGGA 157526 Query 130254 AGA---GTTCCTTCTTTTCTGATGGATCTTTGATGTA 130287 | | ||||||| ||| || ||| |||||||| Sbjct 157525 ACAACCTATCCTTCTCTTCAGA---ATCCTTGATGTA 157492 >seq34050 Length=239353 Score = 120 bits (132), Expect = 4e-22 Identities = 123/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||| || || ||||| | |||||||||||| | | || Sbjct 39580 GCAAAATCGCAGTGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGATAACCCC 39521 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| ||||| |||| |||||| || |||||||| ||||||||||||||| Sbjct 39520 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATC 39461 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||||| ||||| || || || || | ||||||||| || || Sbjct 39460 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 39420 >seq33753 Length=114126 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| | ||||| || || ||||| | |||||||||||| ||| | Sbjct 59741 GCAAAATCGCAGTGCAACCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACTCC 59682 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| | ||| ||||| |||| |||||| || |||||||| |||||||||| |||| Sbjct 59681 GGCATCAAACCGCGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGATGATC 59622 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 130176 ||||| ||||| || || || || | ||||||||| || || Sbjct 59621 CCCTCAACACAAGCAAAGGCCAACAAACGCTCAGCGAATGA 59581 >seq33462 Length=126448 Score = 98.7 bits (108), Expect = 1e-15 Identities = 247/370 (67%), Gaps = 4/370 (1%) Strand=Plus/Plus Query 14153 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGC 14212 || |||||||| ||||||||||| ||||| || || || || | ||||||||| || | Sbjct 81234 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCACCC 81293 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 | || || | | ||| | || || || ||||| ||||| ||||| || || || Sbjct 81294 CCAAGCCCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGCA- 81352 Query 14273 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 14331 || | ||| || ||| ||||| | ||| | |||||| || || |||||||| Sbjct 81353 GGGGGCTTTAGACTTGGCCTTCTCAAACAAATCCCTCACTCTGGAAGCCCCCACACCCAC 81412 Query 14332 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGC 14391 ||| | ||||||||| | | || | ||| | ||| || || || ||||| || Sbjct 81413 AAATAACTCCACAAACTCTGAAGCAGCACAGGAAAAGAATGGAACCCCAGCCTCACCAGC 81472 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACG 14451 | |||| || | ||||||||||| || || ||| ||| | | || | |||| Sbjct 81473 CACTGCTCTAGCCAAAAGGGTCTTCCCAGTTCCAGGTGGCCCAACCA-AAAGACACCCTT 81531 Query 14452 T-GGGATCCTGGCACCACTGCCAAAGTAGCGTTCAGGTTGTTTAAGGAAGTCCACGATTT 14510 | ||||| ||||||| | || || ||||| | ||| | ||| || || | || Sbjct 81532 TAGGGATTTTGGCACCCAGGGCAGTATATTTATCAGGGTTTTTCAAGAAATCTACCACTT 81591 Query 14511 CTTCCAATTC 14520 ||| |||||| Sbjct 81592 CTTGCAATTC 81601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617836863944000