Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq34345 127 2e-24 seq33599 113 5e-20 seq34050 111 2e-19 seq33753 93.3 5e-14 seq33462 91.5 2e-13 seq34321 82.4 9e-11 >seq34345 Length=307576 Score = 127 bits (140), Expect = 2e-24 Identities = 234/336 (70%), Gaps = 8/336 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9614 ||||| |||||| | ||||| || ||||| || || | || || |||||| || ||| Sbjct 56814 TCAAGAATATCAGCACGATTAGTGGCGGCAATAACTATGATTCCGGTGTTTCCTT--CAA 56757 Query 9615 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9674 |||| ||||| ||||||| |||||||| | ||||| || | || |||||| || Sbjct 56756 AACCGTCCATTTCTGTCAGGAGTTGGTTTAGGGTTTGCTCTCTCTCGTCATTCCCTCCGC 56697 Query 9675 TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATG 9734 | ||| | | | |||| || || |||||||| ||||||| || || ||||| | Sbjct 56696 CAATACCGGTTCCTCTTTGCCGCCCAACAGCATCAATTTCATCAACAAATACAATGCAGG 56637 Query 9735 GTTGATTTTCGCGAGCGA-CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 | ||||| || ||| ||| || || || ||||| || || ||||||||| Sbjct 56636 GAGCGTTTTCCTTGGCTTTCTTGAAA-AGGTCACGGACACGAGATGCACCGACACCAACA 56578 Query 9794 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9852 |||||||| ||||| | || | ||| || | || ||| || ||| | |||||| || Sbjct 56577 AACATCTCGACAAATTCTGAACCTGAA-ATCGAGAAGAAAGGAACACCGGCTTCACCAGC 56519 Query 9853 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 |||||| ||| || || ||||| || ||||| || Sbjct 56518 TATGGCTTTGGCTAGTAGGGTCTTCCCGGTACCAGG 56483 >seq33599 Length=161954 Score = 113 bits (124), Expect = 5e-20 Identities = 303/456 (66%), Gaps = 12/456 (3%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || |||||||| | || || || || ||||||||||| |||||||||||||| Sbjct 157600 TCATTCGCTGAGCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 157659 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || || ||||| | ||||| || ||||| ||| | ||||| || | | |||||| || Sbjct 157660 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAAT 157719 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATT 94973 ||| | ||||| || || ||||| | ||| || ||||| ||| | || | | Sbjct 157720 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGC-GTGCATGCTCTATGGGCT 157778 Query 94974 ATTGCGTATTAA----ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTG 95029 ||| | | || | | | || | | | ||| | | | ||| ||||| |||| Sbjct 157779 GTTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAAGTCACT-TGTGGTT---GAAGCTGTTG 157834 Query 95030 AGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 95089 | ||||||| | |||| | | ||||| ||||| || ||| | | || |||||| | Sbjct 157835 ATATTGAGAGGGAATTCGTGTGTGATGCGCTTCCCTGTGCTTTGGTGGGGATGAATGGGG 157894 Query 95090 AAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGC 95149 | ||| |||| || || | ||| ||||||||||| | | | || ||| ||| Sbjct 157895 ACCTGATGAGCCAATACATAGAATTTGTGGCTGATAGATTGCT-AGGTGCATTGGGATGC 157953 Query 95150 -CTCCAATTTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGG 95208 | | | | || | ||||||| ||||| | |||||| || ||| | | ||| Sbjct 157954 AGTAAAGTGTATAATGTCCAGAATCCGTTTGATTGGATGGAGCTGATCAGCTTACAGGGG 158013 Query 95209 AAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||||| || ||||| || ||||| ||||| || ||| Sbjct 158014 AAGACCAATTTCTTTGAGAAGAGAGTTGGAGAATAT 158049 >seq34050 Length=239353 Score = 111 bits (122), Expect = 2e-19 Identities = 306/458 (67%), Gaps = 16/458 (3%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || |||||||| | || || ||||| ||||||||||| |||||||||||||| Sbjct 39420 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGT 39479 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || || ||||| | ||||| || ||||| ||| | ||||| || | | |||||| || Sbjct 39480 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTATCCTTCTCGAAT 39539 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGA-ACTTTTCAAATT 94973 ||| | ||||| || || ||||| | ||| || ||||| ||| | || | | Sbjct 39540 GAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGC-GTGCATGCTCTATGGGCT 39598 Query 94974 ATTGCGTATTAA----ACCAACGACTGAGACTATTCATTCTATTGTTAAGGAAGCCGTTG 95029 || | | || | | | || | | | ||| | | | ||| ||||| |||| Sbjct 39599 GCTGAGGAGGAAGTTGAGCGAGGAGCGCGTGAAGTCACT-TGTGGTT---GAAGCTGTTG 39654 Query 95030 AGATTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTG 95089 | ||||||| | |||| | | || || ||||| || ||| | | || |||||| | Sbjct 39655 ATATTGAGAGGGAATTCGTGTGTGACGCGCTTCCCTGTGCTTTGGTGGGAATGAATGGGG 39714 Query 95090 AAAAAATGTCTGAATATATTGAGTATGTATCTGATAGATTG-TTGAAGCAGATCGGGGTG 95148 | ||| |||| || || | ||| ||||||||||| | || || || ||| || Sbjct 39715 ATCTGATGAGCCAATACATAGAATTTGTGGCTGATAGATTGCTAGATGC--ATTGGGATG 39772 Query 95149 C-CTCCAATTTGGAA-CTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACG 95206 | | | | | || ||||| ||||| ||||| | |||||| || ||| | | | Sbjct 39773 CAGTAAAGTGTACAATGTCCAA-AATCCGTTTGATTGGATGGAGCTGATCAGCTTACAGG 39831 Query 95207 GGAAGACAAACTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||||||| || ||||| || ||||| ||||| || ||| Sbjct 39832 GGAAGACCAATTTCTTTGAGAAGAGAGTTGGAGAATAT 39869 >seq33753 Length=114126 Score = 93.3 bits (102), Expect = 5e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || |||||||| | || || ||||| ||||||||||| ||| |||||||||| Sbjct 59581 TCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCATCTTCTCTGGGAGT 59640 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || || ||||| | ||||| || ||||| ||| | ||||| | | | |||||| || Sbjct 59641 TTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGAGTTGTCCTTCTCGAAT 59700 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||| | ||||| || || ||||| | ||| || ||||| Sbjct 59701 GAGTTGATCTCGCGAGATGAGGGGTTGCACTGCGATTTTGC 59741 >seq33462 Length=126448 Score = 91.5 bits (100), Expect = 2e-13 Identities = 190/279 (68%), Gaps = 8/279 (3%) Strand=Plus/Plus Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 || |||||||| || ||||| || || |||||||| || || | ||||||||| | | Sbjct 81234 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCTCTTTCATCATTTCCACCC 81293 Query 9674 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 | || || | | ||| | ||||| |||||||||||||||||||| || ||||| Sbjct 81294 CCAAGCCCTGCTCCTCTCTGCCTCCCCACTGCATCAATCTCATCAATGAACACAATGCAG 81353 Query 9734 GGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 9789 || | ||| | | || ||||| | ||||| ||| || | || |||||||| Sbjct 81354 GG--GGCTTTAGACTTGGCCTTCTCAAACAAATCCC--TCACTCTGGAAGCCCCCACACC 81409 Query 9790 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9849 ||||| | ||||||||| | || || | ||| | ||| || || || ||||| Sbjct 81410 CACAAATAACTCCACAAACTCTGAAGCAGCACAGGAAAAGAATGGAACCCCAGCCTCACC 81469 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || | |||| || | ||| ||||| || || || || Sbjct 81470 AGCCACTGCTCTAGCCAAAAGGGTCTTCCCAGTTCCAGG 81508 >seq34321 Length=180555 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 104139 GAGACTACGACTTTGGTTATTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 104196 |||||| || | || |||||||||| ||||||||||||| | | || |||| || | Sbjct 112969 GAGACTTTGATTATGATTATTTTGGTTTCAAAACCCTTGAAAGGTCTTACCTCTTGAA-G 112911 Query 104197 GCTCGATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTAT 104256 | || | || | |||||| ||||| ||||||| ||| | || | | || || Sbjct 112910 GTTC-AGGGAAAAGTTGTGGAAAGGCCACAACACATGTTGATGAGAGTTTCTGTTGGGAT 112852 Query 104257 TCATGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 104316 ||| | | || ||||| |||| | | |||||| | |||||| ||| | ||| Sbjct 112851 TCACAAGAATGATATTGAATCTGCCATCAGGACATATCATTTGATGTCTCAACGATGGTT 112792 Query 104317 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCA 104364 || ||| || | ||||| || || |||||||| || ||||| ||||| Sbjct 112791 CACTCATGCTTCTCCAACACTTTTTAATGCTGGCACTCCAAGGCCCCA 112744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582696495176000