Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq33192 104 1e-17 >seq33192 Length=96237 Score = 104 bits (114), Expect = 1e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 65086 TCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTTTGAACCAATAAAATT 65145 || ||| ||||| ||||||||||| | || | ||| || || || |||| | |||| Sbjct 48662 TCTTGTGCCAAATTGACCATTTGGTTTGAAAAGATTTATGTTATTGCTGCCAACATAATT 48721 Query 65146 CTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCTTCACCGTGATGATATCCTGAATG 65205 |||||||| || ||||| | | | ||||| |||||| ||||| ||| |||| || Sbjct 48722 CTGAGCCAGGCCAATAATGGTACCCTGCAAACTTTGTTCACCATGATGGTATGCTGAGTG 48781 Query 65206 TTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGTTGTTAAA-TTCTTTTTAA 65264 ||||| ||||| ||| ||||||||||| ||| |||| ||| ||| || | |||| Sbjct 48782 CTCAGAAACATAACCAGAGAATTGAGCAACCTTTGCTTCC-TTGACAAAGTTTCTCTTAA 48840 Query 65265 ATGCAGAATACAATATTTTCC 65285 | ||| || ||| || |||| Sbjct 48841 AAGCACAAAACAGGATCTTCC 48861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235457680110000