Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq33599 141 1e-28 seq34050 95.1 1e-14 >seq33599 Length=161954 Score = 141 bits (156), Expect = 1e-28 Identities = 322/472 (68%), Gaps = 12/472 (3%) Strand=Plus/Plus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 ||||||| |||| || || ||| || || ||||| || || || || || || || Sbjct 157308 CGACGAGAAGCACTTTATTAAGCACGTACTTGCCTTTTTTGCCGCCTCCGACGGCATCGT 157367 Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 |||| ||| | | | | || ||| ||||| ||||||||||| ||||| || || Sbjct 157368 TTTGGAGAATCTTGCC--GGACGGTTCATGAAGGAGGTCCAGATTGCGGAGGCGCGTGCG 157425 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 || || | | ||| ||| || |||| ||||||||| |||| |||| || || | Sbjct 157426 TTTTATGGATTCCAGATCGC-CATCGAGAATATCCACTCTGAGATGTACAGTCTTCTGTT 157484 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GT 59913 || | | |||||||| | |||||||||| | | |||||| || || || || || Sbjct 157485 GGAGACTTACATCAAGGATTCTGAAGAGAAGGATAGGTTGTTCCACGCGATTGATACTGT 157544 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCA 59972 ||| | || | | || || | ||||| | | ||||| || || | | |||| Sbjct 157545 GCCCTGT-GTGGAGAAGAAGGCTAAGTGGGCTCTCCGTTGGATTGATGGCTCG-GAATCA 157602 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | ||| | | || || || || || || || |||||||||||||| || Sbjct 157603 TTCGCTGAGCGTTTGTTGGCCTTCGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAGTTTT 157662 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 |||||||| |||||||| |||||||| || | |||||||| || ||||| || ||| Sbjct 157663 TGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTGTCCTTCTCGAATGAG 157722 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTAT 60143 |||| || || || |||||| | || || ||||| ||| | ||||||| Sbjct 157723 TTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGC-GTGCATGCTCTAT 157773 >seq34050 Length=239353 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/176 (73%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 |||||| || | ||| | | || ||||| || || || || |||||||||||||| Sbjct 39419 ATCATTCGCTGAGCGTTTGTTGGCCTTTGCTTGTGTTGAGGGGATCTTCTTCTCTGGGAG 39478 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 || |||||||| |||||||| |||||||| || | |||||||| | ||||| || Sbjct 39479 TTTTTGTGCTATATTCTGGCTGAAAAAGCGCGGTTTGATGCCGGGGTTATCCTTCTCGAA 39538 Query 60089 CGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG-ACGCTCTAT 60143 ||| |||| || || || |||||| | || || ||||| ||| | ||||||| Sbjct 39539 TGAGTTGATCTCGCGAGATGAGGGCTTGCACTGCGATTTTGC-GTGCATGCTCTAT 39593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547994102256000