Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20trifida_20[genbank_20GCA_5F000978395.1_202015-04-07] 77,400 sequences; 512,990,763 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq33599 161 1e-34 seq33700 89.7 6e-13 seq24847 87.8 2e-12 seq20500 86.0 7e-12 seq34008 84.2 2e-11 seq34330 82.4 8e-11 seq33998 82.4 8e-11 seq33620 82.4 8e-11 seq33377 82.4 8e-11 seq32901 82.4 8e-11 seq31364 82.4 8e-11 >seq33599 Length=161954 Score = 161 bits (178), Expect = 1e-34 Identities = 301/435 (69%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||| ||||||| ||||| |||||||| || || | || ||||| | || Sbjct 157748 TGCAAGCCCTCATCTCGCGAGATCAACTCATTCGAGAAGGACAACCCCGGCATCAAACCG 157689 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 ||||| |||| ||| || || ||||| || ||| ||||||||| || || ||||| Sbjct 157688 CGCTTTTTCAGCCAGAATATAGCACAAAAACTCCCAGAGAAGAAGATCCCCTCAACACAA 157629 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCAT 74942 || ||||| | | || | ||||| | | | | | |||||| ||||||| Sbjct 157628 GCGAAGGCCAACAAACGCTCAGCGAATGATTCCGAGCCATCAATCCAACGGAGAGCCCAC 157569 Query 74943 TCAGCTTTTCGTTTGACCGCAGGG-ACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTC 75001 | ||| || | | | | ||||| |||||||| ||||| ||||| | || ||||||| Sbjct 157568 TTAGCCTT-CTTCTCCACACAGGGCACAGTATCAATCGCGTGGAACAACCTATCCTTCTC 157510 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 ||| | |||||||| | | || | || ||| |||| |||| || || || ||| Sbjct 157509 TTCAGAATCCTTGATGTAAGTCTCCAACAGAAGACTGTACATCTCAGAGTGGATATTCTC 157450 Query 75062 GTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGA 75118 | || ||| |||| | | || || | |||||||| |||||||| || ||||| ||| Sbjct 157449 GATGG-CGATCTGGAATCCATAAAACGCACGCGCCTCCGCAATCTGGACCTCCTTCATGA 157391 Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 | | | | | | |||||||| ||||||||||| |||||||| ||||| || ||||| Sbjct 157390 ACCGTCC--GGCAAGATTCTCCAAAACGATGCCGTCGGAGGCGGCAAAAAAGGCAAGTAC 157333 Query 75179 CATTTTGATAAAGTG 75193 || |||||||| Sbjct 157332 GTGCTTAATAAAGTG 157318 >seq33700 Length=271882 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| ||| ||||| |||| |||||||||||||||||||||| |||| ||||| Sbjct 169091 TGCTTTCGTCGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTACTCTAACCAAC 169032 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 169031 TGAGCTACGAAAGC 169018 >seq24847 Length=4864 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| ||||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 1506 TGCTCTCGTTGAGATTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1565 Query 79684 TGAGCTACGAAAGCAAAA 79701 |||||||| | ||| ||| Sbjct 1566 TGAGCTACAAGAGCTAAA 1583 >seq20500 Length=2999 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || |||||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 477 GGTGGGGCTTGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 418 Query 80228 CGAGA 80232 | ||| Sbjct 417 CAAGA 413 >seq34008 Length=442708 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 79621 AGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-AC 79679 ||| ||||||| |||| | || |||| ||||||||||||||||||||||||||| || Sbjct 239142 AGAATGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAAC 239201 Query 79680 CAATTGAGCTACGAAAGC 79697 ||| ||||||| |||||| Sbjct 239202 CAACTGAGCTATGAAAGC 239219 >seq34330 Length=131408 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 106532 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 106591 Query 79684 TGAGCTACGAAAGCA 79698 |||||||||| |||| Sbjct 106592 TGAGCTACGAGAGCA 106606 >seq33998 Length=151488 Score = 82.4 bits (90), Expect = 8e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 136283 CTGCTTTCATTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 136342 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 136343 CTGAGCTATGAAAGC 136357 >seq33620 Length=75125 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || | |||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 31897 GGTGGGGCTCGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 31956 Query 80228 CGAGA 80232 | ||| Sbjct 31957 CAAGA 31961 >seq33377 Length=108589 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || | |||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 58437 GGTGGGGCTCGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 58378 Query 80228 CGAGA 80232 | ||| Sbjct 58377 CAAGA 58373 >seq32901 Length=191151 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 169681 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 169740 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 169741 TGAGCTACGAGAGCTAA 169757 >seq31364 Length=18935 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 80168 GGTGAGGATTGAACTCACGACTTTTGGCACATAAGACCAACACTCTAACCATCTGAGTTA 80227 |||| || | |||| ||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 4099 GGTGGGGCTCGAACCCACGACTTTCGGCTCATAAGACCAACACTCTAACCAACTGAGTTA 4040 Query 80228 CGAGA 80232 | ||| Sbjct 4039 CAAGA 4035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546686568520000